Pre_GI: BLASTP Hits

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Query: NC_004603:370320:392721 Vibrio parahaemolyticus RIMD 2210633 chromosome I, complete

Start: 392721, End: 393386, Length: 666

Host Lineage: Vibrio parahaemolyticus; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: This is a clinical strain isolated in 1996 in Osaka, Japan. It contains a type III secretion system which may enable colonization and penetration of the host intestinal epithelial layer, and possibly lead to septicemia. The genome contains multipe chromosomal rearrangements as compared to Vibrio cholerae. The organism also produces a hemolysin (thermostable direct hemolysin - TDH) that is particular to Vibrio parahaemolyticus. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. This species causes food poisoning (gastroenteritis) in countries that have elevated levels of seafood consumption such as Japan.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016945:370471:400214400214400867654Vibrio cholerae IEC224 chromosome II, complete sequencehemagglutinin associated protein1e-94345
NC_002506:370629:400356400356401048693Vibrio cholerae O1 biovar eltor str. N16961 chromosome II, completehaemagglutinin associated protein3e-94344
NC_009456:787322:851608851608852300693Vibrio cholerae O395 chromosome 1, complete sequencehemagglutinin associated protein3e-94344
NC_012580:353273:376048376048376740693Vibrio cholerae M66-2 chromosome II, complete sequenceDNA methylase N-4/N-63e-94344
NC_012583:361241:411642411642412334693Vibrio cholerae O395 chromosome chromosome II, complete sequenceDNA methylase N-4/N-63e-94344
NC_012667:931390:985200985200985892693Vibrio cholerae MJ-1236 chromosome 2, complete genomehemagglutinin associated protein3e-94344
NC_016446:49618:100895100895101587693Vibrio cholerae O1 str. 2010EL-1786 chromosome 2, completehemagglutinin associated protein3e-94344
NC_003910:486776:504750504750505442693Colwellia psychrerythraea 34H, complete genomehaemagglutinin associated protein9e-85312
NC_008228:776000:782467782467783159693Pseudoalteromonas atlantica T6c, complete genomeDNA methylase N-4/N-62e-71268
NC_014253:312354:329319329319330101783Methanohalobium evestigatum Z-7303 chromosome, complete genomeDNA methylase N-4/N-6 domain-containing protein1e-38159
NC_016585:417979:435333435333436124792Azospirillum lipoferum 4B plasmid AZO_p1, complete sequenceputative phage site-specific DNA-methyltransferase3e-2098.6
NC_016111:2892391:289888828988882899634747Streptomyces cattleya NRRL 8057, complete genomeDNA methylase8e-1890.5
NC_007414:56508:619386193862621684Escherichia coli O157:H7 EDL933 plasmid pO157, complete sequencehypothetical protein8e-1890.5
NC_002128:35000:393633936340046684Escherichia coli O157:H7 str. Sakai plasmid pO157, completehemagglutinin-associated protein8e-1890.5
NC_015063:1:166811668117325645Rahnella sp. Y9602 plasmid pRAHAQ02, complete sequenceDNA methylase N-4/N-6 domain protein4e-1788.2
NC_020387:796253:816956816956817669714Dehalococcoides mccartyi BTF08, complete genomeDNA methyltransferase4e-1788.2
NC_008686:95326:110943110943111620678Paracoccus denitrificans PD1222 chromosome 1, complete sequenceDNA methylase N-4/N-6 domain protein2e-1685.9
NC_009787:17344:180141801418697684Escherichia coli E24377A plasmid pETEC_35, complete sequenceDNA methylase family protein2e-1685.5
NC_005815:61148:893978939790074678Yersinia pestis biovar Microtus str. 91001 plasmid pMT1, completeputative methylase1e-1583.6
NC_004838:51013:666486664867325678Yersinia pestis KIM plasmid pMT-1, complete sequencehypothetical protein1e-1583.6
NC_008118:56777:947909479095467678Yersinia pestis Nepal516 plasmid pMT, complete sequenceDNA methylase1e-1583.6
NC_003134:64672:646726467265349678Yersinia pestis CO92 plasmid pMT1, complete sequenceputative DNA methylase1e-1583.6
NC_009378:106193:130882130882131559678Yersinia pestis Pestoides F plasmid MT, complete sequenceputative methylase1e-1583.6
NC_010158:92819:108442108442109119678Yersinia pestis Angola plasmid pMT-pPCP, complete sequenceDNA methylase1e-1583.2
NC_014330:1324500:133930513393051340087783Brachyspira pilosicoli 95/1000 chromosome, complete genomeDNA methylase N-4/N-6 domain-containing protein2e-1582.4
NC_017319:155958:163189163189163872684Shigella flexneri 2002017 plasmid pSFxv_1, complete sequencehypothetical protein3e-1582
NC_004851:157675:164527164527165210684Shigella flexneri 2a str. 301 plasmid pCP301, complete sequencehypothetical protein3e-1582
NC_003902:3514000:352812935281293528833705Xanthomonas campestris pv. campestris str. ATCC 33913, completesite-specific DNA-methyltransferase3e-1582
NC_014150:2201251:223851922385192239298780Brachyspira murdochii DSM 12563 chromosome, complete genomeDNA methylase N-4/N-6 domain protein4e-1581.6
NC_006582:883922:8929238929238941341212Bacillus clausii KSM-K16, complete genomeadenine-specific DNA methylase3e-1581.6
NC_018604:2871328:288627128862712887047777Brachyspira pilosicoli WesB complete genomeDNA methylase N-4/N-6 domain-containing protein3e-1581.6
NC_018607:2747462:276222627622262763002777Brachyspira pilosicoli B2904 chromosome, complete genomeDNA methylase N-4/N-6 domain-containing protein3e-1581.6
NC_014033:1152994:1164840116484011660841245Prevotella ruminicola 23 chromosome, complete genomeDNA (cytosine-5-)-methyltransferase9e-1580.1
NC_015711:4319648:433960343396034340313711Myxococcus fulvus HW-1 chromosome, complete genomeputative DNA methyltransferase1e-1479.7
NC_011831:4043802:4055528405552840566371110Chloroflexus aggregans DSM 9485, complete genomeDNA methylase N-4/N-6 domain protein2e-1479.3
NC_011831:2728932:273633327363332737247915Chloroflexus aggregans DSM 9485, complete genomeDNA methylase N-4/N-6 domain protein3e-1478.6
NC_009767:2866668:2879315287931528804241110Roseiflexus castenholzii DSM 13941, complete genomeDNA methylase N-4/N-6 domain protein3e-1478.6
NC_006856:95830:960529605296735684Salmonella enterica subsp. enterica serovar Choleraesuis strputative site-specific DNA methyl transferase3e-1478.6
NC_010943:325739:330746330746331456711Stenotrophomonas maltophilia K279a, complete genomeputative site-specific DNA-methyltransferase6e-1477.4
NC_011365:1171536:120245612024561203127672Gluconacetobacter diazotrophicus PAl 5 chromosome, complete genomeDNA methylase N-4/N-6 domain-containing protein2e-1375.9
NC_009767:4819000:483030748303074831305999Roseiflexus castenholzii DSM 13941, complete genomeDNA methylase N-4/N-6 domain protein3e-1375.1
NC_010172:798923:8671778671778686431467Methylobacterium extorquens PA1, complete genomeDNA methylase N-4/N-6 domain protein2e-1272.8
NC_012988:769981:8472298472298487131485Methylobacterium extorquens DM4, complete genomephage methyltransferase2e-1272.4
NC_016906:3006748:3013820301382030152681449Gordonia polyisoprenivorans VH2 chromosome, complete genomemethylase HpaI3e-1272
NC_018867:1407163:1430026143002614312731248Dehalobacter sp. CF chromosome, complete genomeDNA methylase N-4/N-65e-1271.2
NC_002978:234082:2486082486082498371230Wolbachia endosymbiont of Drosophila melanogaster, complete genomeprophage LambdaW1, DNA methylase7e-1270.9
NC_014217:4550544:4555744455574445571861443Starkeya novella DSM 506 chromosome, complete genomeDNA methylase N-4/N-6 domain protein9e-1270.5
NC_016641:2587000:2603244260324426045091266Paenibacillus terrae HPL-003 chromosome, complete genomehypothetical protein7e-1270.5
NC_015873:1119500:112830311283031129109807Megasphaera elsdenii DSM 20460, complete genomeDNA (Cytosine-5-)-methyltransferase1e-1170.1
NC_010175:398453:4104884104884116901203Chloroflexus aurantiacus J-10-fl, complete genomeDNA methylase N-4/N-6 domain protein1e-1169.7
NC_012032:398419:4104544104544116561203Chloroflexus sp. Y-400-fl, complete genomeDNA methylase N-4/N-6 domain protein1e-1169.7
NC_010125:381711:393090393090393770681Gluconacetobacter diazotrophicus PAl 5, complete genomeputative modification methylase1e-1169.7
NC_011365:1103927:110848411084841109161678Gluconacetobacter diazotrophicus PAl 5 chromosome, complete genomeDNA methylase N-4/N-6 domain-containing protein1e-1169.7
NC_020126:7255111:727680772768077277688882Myxococcus stipitatus DSM 14675, complete genomeadenine-specific DNA methyltransferase2e-1169.3
NC_009255:1250939:130151013015101302361852Burkholderia vietnamiensis G4 chromosome 2, complete sequenceDNA methylase N-4/N-6 domain-containing protein3e-1168.9
NC_010981:314745:3355613355613367931233Wolbachia pipientis, complete genomePhage related DNA methylase4e-1168.6
NC_010981:242500:2620412620412632731233Wolbachia pipientis, complete genomePhage related DNA methylase4e-1168.6
NC_010981:1371265:1388212138821213894441233Wolbachia pipientis, complete genomePhage related DNA methylase4e-1168.6
NC_010424:697187:7415747415747432111638Candidatus Desulforudis audaxviator MP104C, complete genomeDNA methylase N-4/N-6 domain protein3e-1168.6
NC_009256:2945059:2954731295473129560321302Burkholderia vietnamiensis G4 chromosome 1, complete sequenceDNA methylase N-4/N-6 domain-containing protein3e-1168.6
NC_014632:1112733:1138770113877011400261257Ilyobacter polytropus DSM 2926 chromosome, complete genomeDNA methylase N-4/N-6 domain-containing protein3e-1168.6
NC_012796:4075583:408655940865594087224666Desulfovibrio magneticus RS-1, complete genomehypothetical protein7e-1167.4
NC_013929:3299736:3347147334714733489251779Streptomyces scabiei 87.22 chromosome, complete genomerestriction-modification system methyltransferase7e-1167.4
NC_009706:2673906:2721831272183127230721242Clostridium kluyveri DSM 555 chromosome, complete genomeDNA methylase7e-1167.4
NC_007432:654904:6757886757886770261239Streptococcus agalactiae A909, complete genomeprophage LambdaSa04, DNA methylase9e-1167
NC_010162:2469915:2481320248132024831551836Sorangium cellulosum 'So ce 56', complete genomehypothetical protein9e-1167
NC_012778:1819559:183252918325291833332804Eubacterium eligens ATCC 27750, complete genomesite-specific DNA-methyltransferase (adenine-specific)8e-1167
NC_003305:922357:9342649342649356671404Agrobacterium tumefaciens str. C58 chromosome linear, completeDNA methyltransferase1e-1066.2
NC_012416:573202:5984745984745997001227Wolbachia sp. wRi, complete genomeDNA methylase2e-1066.2
NC_012416:1079661:1104933110493311061591227Wolbachia sp. wRi, complete genomeDNA methylase2e-1066.2
NC_002978:549454:5722595722595734851227Wolbachia endosymbiont of Drosophila melanogaster, complete genomeprophage LambdaW4, DNA methylase2e-1066.2
NC_003063:1128370:1139089113908911404741386Agrobacterium tumefaciens str. C58 chromosome linear, completehypothetical protein2e-1066.2
NC_003909:386880:4081694081694094101242Bacillus cereus ATCC 10987, complete genomeDNA methylase, family protein3e-1065.5
NC_016616:2997348:3006565300656530077311167Dechlorosoma suillum PS chromosome, complete genomeadenine specific DNA methylase Mod4e-1065.1
NC_016812:152831:1621551621551638941740Sinorhizobium fredii HH103, complete genomemodification methylase EcaI4e-1065.1
NC_011898:3367457:3396191339619133974321242Clostridium cellulolyticum H10, complete genomeDNA methylase N-4/N-6 domain protein3e-1065.1
NC_016633:3069518:3099711309971131009551245Sphaerochaeta pleomorpha str. Grapes chromosome, complete genomeDNA modification methylase5e-1064.7
NC_017045:1:132401324014139900Riemerella anatipestifer ATCC 11845 = DSM 15868 chromosome,DNA methylase n-4/n-6 domain protein5e-1064.3
NC_009633:4097536:4125793412579341270281236Alkaliphilus metalliredigens QYMF chromosome, complete genomeDNA methylase N-4/N-6 domain-containing protein5e-1064.3
NC_010163:614634:629457629457630335879Acholeplasma laidlawii PG-8A chromosome, complete genomeDNA modification methylase6e-1064.3
NC_002737:533291:5450875450875462531167Streptococcus pyogenes M1 GAS, complete genomeconserved hypothetical protein, phage associated8e-1063.9
NC_016803:2431672:244255924425592443287729Desulfovibrio desulfuricans ND132 chromosome, complete genomeDNA methylase N-4/N-6 domain-containing protein9e-1063.5
NC_015422:2078618:2108728210872821099901263Alicycliphilus denitrificans K601 chromosome, complete genomeDNA methylase N-4/N-6 domain-containing protein1e-0963.5
NC_012590:2117027:214046021404602141245786Corynebacterium aurimucosum ATCC 700975, complete genomehypothetical protein1e-0963.2
NC_010320:1268355:1285298128529812865361239Thermoanaerobacter sp. X514 chromosome, complete genomeDNA methylase N-4/N-6 domain-containing protein1e-0963.2
NC_011891:4169796:4184905418490541867041800Anaeromyxobacter dehalogenans 2CP-1, complete genomeDNA methylase N-4/N-6 domain protein2e-0962.8
NC_007760:4143301:4156064415606441578631800Anaeromyxobacter dehalogenans 2CP-C, complete genomeDNA methylase N-4/N-62e-0962.8
NC_015666:3606053:3624377362437736261161740Halopiger xanaduensis SH-6 chromosome, complete genomeDNA methylase N-4/N-6 domain-containing protein2e-0962.4
NC_012587:1203103:1213202121320212149081707Rhizobium sp. NGR234, complete genomemodification methylase EcaI3e-0962.4
NC_009659:3103601:3103601310360131048361236Janthinobacterium sp. Marseille chromosome, complete genomeDNA modification methylase3e-0962
NC_012973:49208:485134851349211699Helicobacter pylori B38 chromosome, complete genometype II adenine methyltransferase3e-0962
NC_010804:996837:1034583103458310358481266Burkholderia multivorans ATCC 17616 chromosome 1, completeputative DNA methylase4e-0961.6
NC_009617:1897887:1913872191387219151041233Clostridium beijerinckii NCIMB 8052 chromosome, complete genomeDNA methylase N-4/N-6 domain-containing protein4e-0961.6
NC_010084:2484000:2488925248892524901901266Burkholderia multivorans ATCC 17616 chromosome 1, completeDNA methylase N-4/N-6 domain-containing protein4e-0961.6
NC_016026:1969766:1978706197870619800371332Micavibrio aeruginosavorus ARL-13 chromosome, complete genomeDNA methylase family protein5e-0961.2
NC_009511:1746631:1754713175471317561641452Sphingomonas wittichii RW1 chromosome, complete genomeDNA methylase N-4/N-6 domain-containing protein5e-0961.2
NC_010546:4590994:460997546099754610862888Cyanothece sp. ATCC 51142 chromosome circular, complete sequenceputative DNA methylase N-4/N-66e-0960.8
NC_014393:4775452:4810611481061148118671257Clostridium cellulovorans 743B chromosome, complete genomeDNA methylase N-4/N-6 domain-containing protein7e-0960.8
NC_010337:2848360:2893873289387328951051233Heliobacterium modesticaldum Ice1, complete genomeDNA methylase1e-0860.5
NC_015311:2626850:2653783265378326550721290Prevotella denticola F0289 chromosome, complete genomeDNA (cytosine-5-)-methyltransferase2e-0859.7
NC_014963:3942363:396009839600983960934837Terriglobus saanensis SP1PR4 chromosome, complete genomeDNA methylase N-4/N-6 domain-containing protein2e-0859.7
NC_012471:141463:1552281552281563941167Streptococcus equi subsp. equi 4047, complete genomephage DNA methylase1e-0859.7
NS_000195:526983:528804528804529706903Candidatus Cloacamonas acidaminovoransputative Site-specific DNA-methyltransferase (cytosine-N(4)-specific)1e-0859.7
NC_009633:2592000:2615672261567226169461275Alkaliphilus metalliredigens QYMF chromosome, complete genomeDNA methylase N-4/N-6 domain-containing protein1e-0859.7
NC_020207:1170000:1176467117646711776661200Enterococcus faecium NRRL B-2354, complete genomeDNA methylase2e-0858.9
NC_013364:928486:9380159380159393311317Escherichia coli O111:H- str. 11128, complete genomeputative methyltransferase3e-0858.9
NC_013353:922937:9324669324669337821317Escherichia coli O103:H2 str. 12009, complete genomemethyltransferase3e-0858.9
AP010958:922937:9324669324669337821317Escherichia coli O103:H2 str. 12009 DNA, complete genomepredicted methyltransferase3e-0858.9
NC_004557:2037500:2054930205493020560031074Clostridium tetani E88, complete genomechromosome partitioning parB family protein3e-0858.5
NC_010524:4788753:4795843479584347971861344Leptothrix cholodnii SP-6, complete genomeDNA methylase N-4/N-6 domain protein3e-0858.5
NC_015977:2807782:2829379282937928310581680Roseburia hominis A2-183 chromosome, complete genomeadenine specific DNA methylase Mod3e-0858.5
NC_009455:1025915:1035825103582510380262202Dehalococcoides sp. BAV1 chromosome, complete genomeDNA methylase N-4/N-6 domain-containing protein3e-0858.5
NC_015593:1587684:1590233159023315915491317Sphingobium chlorophenolicum L-1 chromosome chromosome 1, completeDNA methylase N-4/N-6 domain-containing protein4e-0858.2
NC_013731:11605:3985539855417891935Spirosoma linguale DSM 74 plasmid pSLIN01, complete sequenceDNA methylase N-4/N-6 domain protein4e-0858.2
NC_015697:506494:5218415218415230701230Lactobacillus reuteri SD2112 chromosome, complete genomeDNA (cytosine-5-)-methyltransferase5e-0857.8
NC_015697:468234:4808454808454820711227Lactobacillus reuteri SD2112 chromosome, complete genomeDNA (cytosine-5-)-methyltransferase5e-0857.8
NC_013364:1596278:1615476161547616165341059Escherichia coli O111:H- str. 11128, complete genomeputative DNA methylase6e-0857.8
NC_014328:303063:3623603623603636041245Clostridium ljungdahlii ATCC 49587 chromosome, complete genomeputative methylase8e-0857.4
NC_014006:3124818:3130263313026331322031941Sphingobium japonicum UT26S chromosome 1, complete genomeadenine-specific DNA-methyltransferase1e-0756.6
NC_009718:579291:580462580462581316855Fervidobacterium nodosum Rt17-B1, complete genomeDNA methylase N-4/N-6 domain-containing protein1e-0756.6
NC_011748:1408280:142512214251221425448327Escherichia coli 55989, complete genome1e-0756.2
CU928145:1408280:142512214251221425448327Escherichia coli 55989 chromosome, complete genomefragment of putative DNA adenine methyltransferase ( DNA methylase) from phage origin (partial)1e-0756.2
NC_008530:1454118:1470694147069414719201227Lactobacillus gasseri ATCC 33323, complete genomeParB-like nuclease domain and DNA modification methylase domain2e-0756.2
NC_008358:2638245:2697509269750926988611353Hyphomonas neptunium ATCC 15444, complete genomeDNA methylase2e-0756.2
NC_009801:1419324:1436177143617714372231047Escherichia coli E24377A, complete genomeDNA methylase3e-0755.5
NC_018870:2316499:2354383235438323556361254Thermacetogenium phaeum DSM 12270 chromosome, complete genomeDNA methylase3e-0755.1
NC_016625:1259778:1260363126036312616371275Burkholderia sp. YI23 chromosome 2, complete sequenceDNA methylase N-4/N-6 domain-containing protein4e-0755.1
NC_009621:389181:3934683934683955912124Sinorhizobium medicae WSM419 plasmid pSMED02, complete sequenceadenine-specific DNA-methyltransferase5e-0754.7
NC_014410:800500:8039348039348058771944Thermoanaerobacterium thermosaccharolyticum DSM 571 chromosome,DNA methylase N-4/N-6 domain protein5e-0754.7
NC_013665:2176502:219282221928222193739918Methanocella paludicola SANAE, complete genomeputative DNA methylase5e-0754.7
NC_016627:4323370:4352807435280743540601254Clostridium clariflavum DSM 19732 chromosome, complete genomeDNA modification methylase7e-0753.9
NC_007404:1570000:1578754157875415810932340Thiobacillus denitrificans ATCC 25259, complete genomeadenine specific DNA-methyltransferase7e-0753.9
NC_012658:1405788:140578814057881406594807Clostridium botulinum Ba4 str. 657 chromosome, complete genomeDNA methylase8e-0753.9
NC_017080:3712000:3725298372529837275532256Phycisphaera mikurensis NBRC 102666, complete genomeputative modification methylase8e-0753.9
NC_014410:800500:8099698099698112221254Thermoanaerobacterium thermosaccharolyticum DSM 571 chromosome,DNA methylase N-4/N-6 domain protein9e-0753.9
NC_015577:1392390:1400399140039914023631965Treponema azotonutricium ZAS-9 chromosome, complete genomesite-specific DNA-methyltransferase1e-0653.5
NC_014314:69872:792407924080220981Dehalogenimonas lykanthroporepellens BL-DC-9 chromosome, completeDNA methylase N-4/N-6 domain-containing protein1e-0653.5
NC_011601:1269500:1286139128613912871881050Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomeDNA methylase1e-0653.1
NC_018604:758819:762103762103763008906Brachyspira pilosicoli WesB complete genomeDNA methylase N-4/N-6 domain-containing protein1e-0653.1
NC_008825:4025705:403737340373734038056684Methylibium petroleiphilum PM1, complete genomeDNA modification methylase-like protein1e-0653.1
NC_014562:983398:1001266100126610023061041Pantoea vagans C9-1 chromosome, complete genomehypothetical protein2e-0652.8
NC_014393:937000:9529689529689542211254Clostridium cellulovorans 743B chromosome, complete genomeDNA methylase N-4/N-6 domain-containing protein2e-0652.4
NC_009012:1934107:1964406196440619656591254Clostridium thermocellum ATCC 27405, complete genomeParB-like nuclease3e-0652
NC_015164:493159:523368523368524156789Bacteroides salanitronis DSM 18170 chromosome, complete genomeDNA methylase N-4/N-6 domain-containing protein3e-0652
NC_007146:1405459:141839814183981419135738Haemophilus influenzae 86-028NP, complete genomemodification methylase DpnIIB-like4e-0651.6
NC_002578:877609:889774889774890703930Thermoplasma acidophilum DSM 1728, complete genomehypothetical protein4e-0651.6
NC_014922:825396:839238839238839975738Haemophilus influenzae F3047 chromosome, complete genomeDNA methylase5e-0651.2
NC_015520:2974048:2990245299024529914981254Mahella australiensis 50-1 BON chromosome, complete genomeParB domain-containing protein nuclease6e-0650.8