Pre_GI Gene

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Host: NC_008228 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_008228:776000 Pseudoalteromonas atlantica T6c, complete genome

Host Lineage: Pseudoalteromonas atlantica; Pseudoalteromonas; Pseudoalteromonadaceae; Alteromonadales; Proteobacteria; Bacteria

General Information: Isolated from a biofilm from San Diego Bay in California. Marine biofilm bacterium associated with shell disease in shellfish. A common marine bacterium that exists both in the water column, and in biofilms attached to surfaces. This organism produces a well characterized, commercially important agarase. Pseudoalteromonas atlantica has been isolated from lesions on crabs with shell disease. Shell disease is characterized by progressive degradation of the shell, often leading to an infection of the hemolymph (blood) and may be caused by Pseudoalteromonas, Alteromonas, Vibrio, or other marine organisms. In addition to producing extracellular enzymes which attack the shell, Pseudoalteromonas atlantica produces a the lipopolysaccharide which has been shown to be a potential virulence factor in shell disease.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
776394777047654hypothetical proteinBLASTP
777783778517735hypothetical proteinBLASTP
779075779485411hypothetical protein
779593780189597hypothetical proteinBLASTP
780204780797594transcriptional regulator XRE familyQuickGO ontology
781046781546501hypothetical proteinBLASTP
781558781851294phage transcriptional regulator AlpAQuickGO ontology
781919782467549hypothetical protein
782467783159693DNA methylase N-4N-6QuickGO ontologyBLASTP
783170783427258hypothetical protein
783481783990510hypothetical protein
783983784516534hypothetical protein
784516784758243phage proteinQuickGO ontologyBLASTP
784755785525771hypothetical proteinBLASTP
7855287882092682bacteriophage replication gene AQuickGO ontologyBLASTP
788244788855612hypothetical protein
789096789674579hypothetical proteinBLASTP
789735790508774hypothetical protein
790563790808246phage transcriptional activator OgrdeltaQuickGO ontologyBLASTP
790979791593615hypothetical protein
7916147926301017phage portal protein PBSX familyQuickGO ontologyBLASTP
7926317943641734protein of unknown function DUF264QuickGO ontologyBLASTP