Pre_GI: BLASTP Hits

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Query: NC_004337:4374500:4385883 Shigella flexneri 2a str. 301, complete genome

Start: 4385883, End: 4386431, Length: 549

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated in 1984 from a patient in Beijing, China. It is similar to pathogenic Escherichia coli except for the more numerous insertion sequences and contains a virulence plasmid (pCP301). Causes enteric disease. Shigella This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017328:4417000:442815144281514428876726Shigella flexneri 2002017 chromosome, complete genomeputative N-acetylneuraminic acid outer membrane channel protein nanC precursor2e-105380
NC_009800:4529504:454378845437884544504717Escherichia coli HS, complete genomeoligogalacturonate-specific porin protein (KdgM)2e-105380
NC_011751:5070597:507814450781445078860717Escherichia coli UMN026 chromosome, complete genomeN-acetylnuraminic acid outer membrane channel protein2e-105380
NC_011750:4978000:498624049862404986956717Escherichia coli IAI39 chromosome, complete genomeN-acetylnuraminic acid outer membrane channel protein2e-105380
NC_002695:5381576:539369353936935394409717Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein2e-105380
NC_008258:4345400:435638343563834357099717Shigella flexneri 5 str. 8401, complete genomehypothetical protein2e-105380
AP010958:5272863:529366252936625294378717Escherichia coli O103:H2 str. 12009 DNA, complete genomeN-acetylnuraminic acid outer membrane channel protein2e-105380
NC_008253:4817864:484401648440164844732717Escherichia coli 536, complete genomehypothetical protein YjhA precursor2e-105380
CP002185:4791811:480122848012284801944717Escherichia coli W, complete genomeN-acetylnuraminic acid outer membrane channel protein2e-105380
CU928160:4570498:459942945994294600145717Escherichia coli IAI1 chromosome, complete genomeN-acetylnuraminic acid outer membrane channel protein2e-105380
NC_010473:4630361:463861646386164639332717Escherichia coli str. K-12 substr. DH10B, complete genomeN-acetylnuraminic acid outer membrane channel protein2e-105380
CP002516:4199133:421092642109264211642717Escherichia coli KO11, complete genomeOligogalacturonate-specific porin2e-105380
NC_007946:4875997:490351849035184904243726Escherichia coli UTI89, complete genomehypothetical protein2e-105380
NC_008563:4905186:491974749197474920472726Escherichia coli APEC O1, complete genomehypothetical protein2e-105380
AC_000091:4534935:454346545434654544181717Escherichia coli W3110 DNA, complete genomeN-acetylnuraminic acid outer membrane channel protein2e-105380
NC_000913:4528278:453680845368084537524717Escherichia coli K12, complete genomeN-acetylnuraminic acid outer membrane channel protein2e-105380
NC_010498:4930649:494341049434104944126717Escherichia coli SMS-3-5, complete genomeN-acetylneuraminic acid porin NanC2e-105380
NC_013941:5219841:523195852319585232683726Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehypothetical protein2e-105380
NC_016902:4199133:421092642109264211642717Escherichia coli KO11FL chromosome, complete genomeOligogalacturonate-specific porin2e-105380
NC_016822:4889656:490050649005064901222717Shigella sonnei 53G, complete genomeOligogalacturonate-specific porin2e-105380
NC_013364:5255700:526893352689335269649717Escherichia coli O111:H- str. 11128, complete genomeN-acetylnuraminic acid outer membrane channel protein2e-105380
NC_013353:5272863:529366252936625294378717Escherichia coli O103:H2 str. 12009, complete genomeN-acetylnuraminic acid outer membrane channel protein2e-105380
NC_013008:5411285:542340254234025424118717Escherichia coli O157:H7 str. TW14359 chromosome, complete genomeN-acetylnuraminic acid outer membrane channel protein2e-105380
NC_012967:4510393:451892345189234519639717Escherichia coli B str. REL606 chromosome, complete genomeN-acetylnuraminic acid outer membrane channel protein2e-105380
NC_012947:3883484:389446938944693895185717Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeoligogalacturonate-specific porin2e-105380
NC_012759:4467288:447554344755434476259717Escherichia coli BW2952 chromosome, complete genomeN-acetylnuraminic acid outer membrane channel protein2e-105380
NC_011745:5114500:512505351250535125769717Escherichia coli ED1a chromosome, complete genomeN-acetylnuraminic acid outer membrane channel protein2e-105380
NC_011742:4873351:488160648816064882322717Escherichia coli S88 chromosome, complete genomeN-acetylnuraminic acid outer membrane channel protein2e-105380
NC_011741:4570498:459942945994294600145717Escherichia coli IAI1 chromosome, complete genomeN-acetylnuraminic acid outer membrane channel protein2e-105380
NC_011601:4856717:487740948774094878125717Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomeN-acetylnuraminic acid outer membrane channel protein2e-105380
CP002797:4656327:466828746682874668835549Escherichia coli NA114, complete genomeN-acetylneuraminic acid outer membrane channel protein NanC8e-105379
NC_004741:4364235:437697943769794377527549Shigella flexneri 2a str. 2457T, complete genomehypothetical protein8e-105379
NC_011353:5455224:546734154673415467889549Escherichia coli O157:H7 str. EC4115 chromosome, complete genomeoligogalacturonate-specific porin protein8e-105379
NC_004431:5123325:513350851335085134233726Escherichia coli CFT073, complete genomeHypothetical protein yjhA precursor8e-105379
NC_013361:5580741:558730155873015588017717Escherichia coli O26:H11 str. 11368 chromosome, complete genomeN-acetylnuraminic acid outer membrane channel protein7e-105379
NC_007613:4403070:441257144125714413296726Shigella boydii Sb227, complete genomehypothetical protein9e-105378
NC_009801:4882684:490101449010144901730717Escherichia coli E24377A, complete genomeoligogalacturonate-specific porin protein (KdgM)2e-104377
NC_011745:4862218:487319248731924873932741Escherichia coli ED1a chromosome, complete genomeputative N-acetylneuraminic acid outer membrane channel protein nanC1e-60231
NC_004431:3409389:347458534745853475325741Escherichia coli CFT073, complete genomeHypothetical protein yjhA precursor1e-60231
NC_011751:3453683:349769234976923498432741Escherichia coli UMN026 chromosome, complete genomeputative N-acetylneuraminic acid outer membrane channel protein nanC1e-60231
NC_009792:1345500:135474313547431355540798Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein1e-29129
NC_013282:3216226:322811032281103228895786Cronobacter turicensis, complete genomehypothetical protein3e-1581.3
NC_015761:2982000:300626230062623007170909Salmonella bongori NCTC 12419, complete genomemembrane permease7e-1580.1
NC_020063:4653422:467165046716504672348699Enterobacteriaceae bacterium strain FGI 57, complete genomeouter membrane protein (porin)9e-1579.7
NC_011080:4177443:418418441841844184876693Salmonella enterica subsp. enterica serovar Newport str. SL254,porin OmpL4e-0754.7
NC_010102:1979742:198669119866911987383693Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein5e-0650.8
NC_011080:1209935:122300612230061223698693Salmonella enterica subsp. enterica serovar Newport str. SL254,oligogalacturonate-specific porin9e-0650.1
NC_011083:1216500:122538212253821226074693Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,oligogalacturonate-specific porin9e-0650.1
NC_006905:1186895:119996511999651200657693Salmonella enterica subsp. enterica serovar Choleraesuis strputative outer membrane protein9e-0650.1
NC_003197:1207597:122066612206661221358693Salmonella typhimurium LT2, complete genomeputative outer membrane protein9e-0650.1
NC_006511:1770000:177696617769661777658693Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCputative secreted protein9e-0650.1
NC_011147:1763681:177214917721491772841693Salmonella enterica subsp. enterica serovar Paratyphi A strhypothetical protein9e-0650.1
NC_011274:1094379:110744311074431108135693Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91hypothetical protein9e-0650.1
NC_016810:1163919:117698911769891177681693Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein9e-0650.1
NC_016856:1165941:117901111790111179703693Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative outer membrane protein9e-0650.1
NC_016857:1163919:117698911769891177681693Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative outer membrane protein9e-0650.1
NC_016860:1205282:121835212183521219044693Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein9e-0650.1
NC_016863:1165232:117830211783021178994693Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative outer membrane protein9e-0650.1
NC_017046:1164176:117724611772461177938693Salmonella enterica subsp. enterica serovar Typhimurium str. 798hypothetical protein9e-0650.1
NC_016831:1905289:191693819169381917630693Salmonella enterica subsp. enterica serovar Gallinarum/pullorumhypothetical protein1e-0549.7