Pre_GI Gene

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Host: NC_009800 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_009800:4529504 Escherichia coli HS, complete genome

Host Lineage: Escherichia coli; Escherichia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (HS; serotype O9) is a human commensal that was originally isolated from a laboratory scientist at Walter Reed Army Institute of Research in 1978 (Levine, 1978). Strain HS colonizes the human gastrointestinal tract in challenge experiments, but no overt signs of disease occur. Thus, this strain represents a genomic baseline for human gastrointestinal tract colonization. This organism was named for its discoverer, Theodore Escherich, and is one of the premier model organisms used in the study of bacterial genetics, physiology, and biochemistry. This enteric organism is typically present in the lower intestine of humans, where it is the dominant facultative anaerobe present, but it is only one minor constituent of the complete intestinal microflora. E. coli, is capable of causing various diseases in its host, especially when they acquire virulence traits. E. coli can cause urinary tract infections, neonatal meningitis, and many different intestinal diseases, usually by attaching to the host cell and introducing toxins that disrupt normal cellular processes.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
452950445305351032L-idonate 5-dehydrogenaseQuickGO ontologyBLASTP
45307524531315564thermosensitive gluconokinaseQuickGO ontologyBLASTP
453131945323381020oxidoreductase zinc-binding dehydrogenase familyQuickGO ontologyBLASTP
4532533453261987tRNA-LeuQuickGO ontologyBLASTP
453270745346561950site-specific recombinase phage integrase familyQuickGO ontologyBLASTP
453499545361701176hypothetical proteinBLASTP
45363004537112813ISEhe3 transposase orfBQuickGO ontologyBLASTP
45371694537447279ISEhe3 transposase orfAQuickGO ontologyBLASTP
45374924538295804hypothetical proteinBLASTP
453828845403632076putative ATPase family associated with various cellular activities AAAQuickGO ontologyBLASTP
45405334541405873hypothetical proteinBLASTP
45416174542597981hypothetical proteinBLASTP
454266245437681107kelch repeat proteinQuickGO ontologyBLASTP
45437884544504717oligogalacturonate-specific porin protein KdgMQuickGO ontologyBLASTP
45451704545307138hypothetical proteinBLASTP
45459604546562603type 1 fimbriae regulatory protein FimBQuickGO ontologyBLASTP
45470404547636597type 1 fimbriae regulatory protein FimEQuickGO ontologyBLASTP