Pre_GI Gene

Some Help

Host: NC_011147 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_011147:1763681 Salmonella enterica subsp. enterica serovar Paratyphi A str

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is a clinical isolate collected from a child with paratyphoid fever in Karachi, Pakistan, 2004. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
17636811764331651DNA-binding transcriptional regulator CsgDQuickGO ontologyBLASTP
17643361764731396curli assembly protein CsgEQuickGO ontologyBLASTP
17652011766034834assemblytransport component in curli productionQuickGO ontologyBLASTP
17660731766603531hypothetical proteinBLASTP
17666561767210555hypothetical proteinBLASTP
17672341767971738hydrolaseQuickGO ontologyBLASTP
176805617689949392-hydroxyacid dehydrogenaseQuickGO ontologyBLASTP
1769231176931585tRNA-SerQuickGO ontologyBLASTP
176946917705721104oxidoreductaseQuickGO ontologyBLASTP
177058617718661281sialic acid transporterQuickGO ontologyBLASTP
17721491772841693hypothetical proteinBLASTP
17745521775232681N-acetylmannosamine-6-phosphate 2-epimeraseQuickGO ontologyBLASTP
177556917770651497sodiumglucose cotransporterQuickGO ontologyBLASTP
17773511778232882transcriptional regulatorQuickGO ontologyBLASTP
17783381779192855hypothetical proteinBLASTP
178001817815261509sodiumproline symporterQuickGO ontologyBLASTP
178200517859103906multifunctional functional transcriptional regulatorproline dehydrogenasepyrroline-5-carboxylate dehydrogenaseQuickGO ontologyBLASTP
17859691786364396hypothetical proteinBLASTP
17863611786999639transcriptional regulatorQuickGO ontologyBLASTP