Pre_GI: BLASTP Hits

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Query: NC_004129:4093610:4103610 Pseudomonas fluorescens Pf-5, complete genome

Start: 4103610, End: 4106789, Length: 3180

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011892:352652:3571903571903603933204Methylobacterium nodulans ORS 2060 plasmid pMNOD01, completeFAD linked oxidase domain protein01035
NC_010505:4396800:4396800439680043998533054Methylobacterium radiotolerans JCM 2831, complete genomeFAD linked oxidase domain protein01023
NC_007606:1515403:1535049153504915381053057Shigella dysenteriae Sd197, complete genomeputative oxidase0986
NC_007482:607365:6230166230166260663051Pseudoalteromonas haloplanktis TAC125 chromosome II, completeputative Fe-S oxidoreductase0925
NC_008228:2068641:2085974208597420890153042Pseudoalteromonas atlantica T6c, complete genomeFAD linked oxidase-like0922
NC_008345:2717945:2738056273805627411273072Shewanella frigidimarina NCIMB 400, complete genomeFAD linked oxidase domain protein0908
NC_019962:1676632:1676632167663216797723141Natrinema pellirubrum DSM 15624, complete genomeFAD/FMN-dependent dehydrogenase3e-98360
NC_015458:1692401:1693145169314516961533009Pusillimonas sp. T7-7 chromosome, complete genomehypothetical protein2e-96354
NC_015136:2282488:2284431228443122873882958Burkholderia sp. CCGE1001 chromosome 1, complete sequenceD-lactate dehydrogenase (cytochrome)6e-93343
NC_007484:495784:4966644966644996182955Nitrosococcus oceani ATCC 19707, complete genomehypothetical protein4e-92340
NC_006396:2057209:2080592208059220836573066Haloarcula marismortui ATCC 43049 chromosome I, complete sequenceputative oxidoreductase7e-92339
NC_015711:7265439:7267459726745972706263168Myxococcus fulvus HW-1 chromosome, complete genomeFAD-binding oxidoreductase6e-92339
NC_013202:2449500:2450933245093324540043072Halomicrobium mukohataei DSM 12286, complete genomeD-lactate dehydrogenase (cytochrome)2e-91337
NC_015658:319296:3356423356423388363195Halopiger xanaduensis SH-6 plasmid pHALXA01, complete sequenceD-lactate dehydrogenase (cytochrome)4e-89330
NC_019792:3446895:3490376349037634934623087Natronobacterium gregoryi SP2 chromosome, complete genomeFAD/FMN-dependent dehydrogenase6e-88326
NC_010002:3357752:3359838335983833629363099Delftia acidovorans SPH-1, complete genomeD-lactate dehydrogenase (cytochrome)8e-87322
NC_018531:1991218:1993356199335619963042949Arthrobacter sp. Rue61a chromosome, complete genomehypothetical protein3e-76287
NC_014831:2082304:2093372209337220947511380Thermaerobacter marianensis DSM 12885 chromosome, complete genomeFAD linked oxidase domain protein3e-36154
NC_012108:946314:9655979655979669701374Desulfobacterium autotrophicum HRM2, complete genomeGlcD17e-34146
NC_013440:625867:6311286311286341062979Haliangium ochraceum DSM 14365, complete genomeD-lactate dehydrogenase (cytochrome)5e-30134
NC_006510:2044347:2059856205985620612651410Geobacillus kaustophilus HTA426, complete genomeglycolate oxidase subunit2e-29132
NC_010794:1476494:1494414149441414958051392Methylacidiphilum infernorum V4, complete genomeGlycolate dehydrogenase subunit GlcD4e-29130
NC_008786:18688:3591335913373251413Verminephrobacter eiseniae EF01-2, complete genomeFAD linked oxidase domain protein9e-29129
NC_004757:1089057:1096562109656210979291368Nitrosomonas europaea ATCC 19718, complete genomeD-lactate dehydrogenase1e-28129
NC_015145:3236445:3266407326640732692532847Arthrobacter phenanthrenivorans Sphe3 chromosome, complete genomeFAD/FMN-dependent dehydrogenase4e-28127
NC_016803:1027017:1034557103455710373732817Desulfovibrio desulfuricans ND132 chromosome, complete genomeD-lactate dehydrogenase6e-27123
NC_017295:2630179:2649449264944926508521404Clostridium acetobutylicum EA 2018 chromosome, complete genomeFAD/FMN-containing dehydrogenase8e-27123
NC_003030:2630931:2650203265020326516061404Clostridium acetobutylicum ATCC 824, complete genomeFAD/FMN-containing dehydrogenase8e-27123
NC_015687:2632557:2651829265182926532321404Clostridium acetobutylicum DSM 1731 chromosome, complete genomeFAD/FMN-containing dehydrogenase8e-27123
NC_008025:669281:6692816692816707291449Deinococcus geothermalis DSM 11300, complete genomeFAD linked oxidase-like protein8e-27123
NC_008027:775896:7935617935617963712811Pseudomonas entomophila L48, complete genomeD-lactate deshydrogenase2e-26122
NC_007643:889755:9286959286959301431449Rhodospirillum rubrum ATCC 11170, complete genomeD-lactate dehydrogenase (cytochrome)2e-26122
NC_018691:2863659:2863659286365928664812823Alcanivorax dieselolei B5 chromosome, complete genomeD-lactate dehydrogenase, putative2e-26122
NC_015499:1466794:1475394147539414768001407Thermodesulfobium narugense DSM 14796 chromosome, complete genomeD-lactate dehydrogenase (cytochrome)2e-26121
NC_017179:1239991:1239991123999112413821392Clostridium difficile BI1, complete genomeFAD/FMN-containing dehydrogenase3e-26121
NC_013315:1230214:1230214123021412316051392Clostridium difficile CD196 chromosome, complete genomeFAD/FMN-containing dehydrogenase3e-26121
NC_013316:1225797:1227830122783012292211392Clostridium difficile R20291, complete genomeputative FAD/FMN-containing dehydrogenase3e-26121
NC_017111:2383388:2383388238338823848151428Acetobacter pasteurianus IFO 3283-32, complete genomeD-Lactate dehydrogenase8e-26120
NC_017108:2383370:2383370238337023847971428Acetobacter pasteurianus IFO 3283-12, complete genomeD-Lactate dehydrogenase8e-26120
NC_017100:2383487:2386033238603323874601428Acetobacter pasteurianus IFO 3283-03, complete genomeD-Lactate dehydrogenase8e-26120
NC_013209:2384826:2384826238482623862531428Acetobacter pasteurianus IFO 3283-01, complete genomeD-Lactate dehydrogenase8e-26120
NC_017121:2383375:2383375238337523848021428Acetobacter pasteurianus IFO 3283-07, complete genomeD-Lactate dehydrogenase8e-26120
NC_017125:2383467:2386013238601323874401428Acetobacter pasteurianus IFO 3283-22, complete genomeD-Lactate dehydrogenase8e-26120
NC_017146:2383509:2386055238605523874821428Acetobacter pasteurianus IFO 3283-26, complete genomeD-Lactate dehydrogenase8e-26120
NC_017150:2290681:2292572229257222939991428Acetobacter pasteurianus IFO 3283-01-42C, complete genomeD-Lactate dehydrogenase8e-26120
NC_010501:734363:7633037633037661132811Pseudomonas putida W619, complete genomeD-lactate dehydrogenase (cytochrome)7e-26120
NC_015850:2451957:2468581246858124700501470Acidithiobacillus caldus SM-1 chromosome, complete genomeglycolate dehydrogenase subunit GlcD4e-26120
NC_014758:1387470:1406337140633714077161380Calditerrivibrio nitroreducens DSM 19672 chromosome, completefad linked oxidase domain protein4e-26120
NC_016027:346768:3636443636443650981455Gluconacetobacter xylinus NBRC 3288, complete genomeD-Lactate dehydrogenase1e-25119
NC_017986:1862408:1862408186240818652182811Pseudomonas putida ND6 chromosome, complete genomeD-lactate dehydrogenase2e-25119
NC_002947:5386489:5386489538648953892992811Pseudomonas putida KT2440, complete genomeD-lactate dehydrogenase, putative2e-25118
NC_009434:3611738:3614681361468136175332853Pseudomonas stutzeri A1501, complete genomeD-lactate dehydrogenase, putative5e-25117
NC_010322:5293652:5294873529487352976832811Pseudomonas putida GB-1 chromosome, complete genomeD-lactate dehydrogenase6e-25117
NC_009440:1045882:1045882104588210472401359Metallosphaera sedula DSM 5348 chromosome, complete genomeD-lactate dehydrogenase6e-25117
NC_014834:614890:6401306401306415661437Rhodopseudomonas palustris DX-1 chromosome, complete genomeFAD linked oxidase domain-containing protein3e-24115
NC_015733:3595882:3617787361778736192861500Pseudomonas putida S16 chromosome, complete genomeglycolate oxidase, GlcD subunit2e-24115
NC_010674:370629:3706293706293720321404Clostridium botulinum B str. Eklund 17B, complete genomeFAD/FMN-containing dehydrogenase2e-24115
NC_015731:402280:4175584175584189311374Nitrosomonas sp. Is79A3 chromosome, complete genomeFAD linked oxidase domain-containing protein2e-24115
NC_006138:2341975:2363389236338923662202832Desulfotalea psychrophila LSv54, complete genomeD-lactate dehydrogenase2e-24115
NC_004129:4434259:4436707443670744381311425Pseudomonas fluorescens Pf-5, complete genomeoxidoreductase, FAD-binding1e-24115
NC_015387:1002955:1017029101702910183751347Marinithermus hydrothermalis DSM 14884 chromosome, complete genomeD-lactate dehydrogenase (cytochrome)6e-24114
NC_010520:1146000:1165186116518611665831398Clostridium botulinum A3 str. Loch Maree, complete genomeputative glycolate oxidase4e-24114
NC_014206:3391352:3405264340526434066251362Geobacillus sp. C56-T3 chromosome, complete genomeFAD linked oxidase3e-24114
NC_018000:1852691:1874853187485318763101458Sinorhizobium fredii USDA 257 chromosome, complete genomeglycolate oxidase subunit GlcD8e-24113
NC_012660:5793200:5794964579496457977742811Pseudomonas fluorescens SBW25 chromosome, complete genomeputative FAD-binding oxidoreductase9e-24113
NC_021150:4350461:4350461435046143532772817Azotobacter vinelandii CA6, complete genomeFe-S/FAD domain protein2e-23112
NC_012560:4350465:4350465435046543532812817Azotobacter vinelandii DJ, complete genomeFe-S/FAD domain protein2e-23112
NC_015169:1:1979919799211991401Deinococcus proteolyticus MRP plasmid pDEIPR01, complete sequenceD-lactate dehydrogenase (cytochrome)1e-23112
NC_010674:1390473:1398740139874014001761437Clostridium botulinum B str. Eklund 17B, complete genomeoxidase, FAD-binding1e-23112
NC_009699:1122000:1135055113505511364521398Clostridium botulinum F str. Langeland chromosome, complete genomeglycolate oxidase1e-23112
NC_020209:3874844:3877014387701438798242811Pseudomonas poae RE*1-1-14, complete genomeputative FAD-binding oxidoreductase1e-23112
NC_010723:1379256:1389943138994313913791437Clostridium botulinum E3 str. Alaska E43, complete genomeoxidase, FAD-binding2e-23111
NC_011891:3369170:3370396337039633718621467Anaeromyxobacter dehalogenans 2CP-1, complete genomeD-lactate dehydrogenase (cytochrome)3e-23111
NC_007503:1111457:1155204115520411565801377Carboxydothermus hydrogenoformans Z-2901, complete genomeglycolate oxidase, GlcD subunit4e-23110
NC_007492:857428:8797258797258825472823Pseudomonas fluorescens PfO-1, complete genomeFAD linked oxidase-like5e-23110
NC_017317:1173619:1189025118902511919462922Corynebacterium ulcerans 809 chromosome, complete genomeputative oxidoreductase2e-22108
NC_015683:1176449:1191857119185711947782922Corynebacterium ulcerans BR-AD22 chromosome, complete genomeputative RNA helicase4e-22107
NC_011830:4645453:4651433465143346528121380Desulfitobacterium hafniense DCB-2, complete genomeD-lactate dehydrogenase (cytochrome)4e-22107
NC_018643:1309804:1318252131825213197451494Alpha proteobacterium HIMB5 chromosome, complete genomeFAD-dependent oxidoreductase family protein,FAD-binding protein5e-22107
NC_015145:3236445:3272686327268632740561371Arthrobacter phenanthrenivorans Sphe3 chromosome, complete genomeglycolate oxidase subunit GlcD9e-22106
NC_006677:1255079:1277697127769712791031407Gluconobacter oxydans 621H, complete genomePutative lactate dehydrogenase9e-22106
NC_003364:756813:7568137568137582401428Pyrobaculum aerophilum str. IM2, complete genomeglycolate oxidase subunit glcD1e-21105
NC_010577:1456909:1476773147677314781611389Xylella fastidiosa M23, complete genomeFAD linked oxidase domain protein5e-21104
NC_008319:1829571:1829571182957118310881518Synechococcus sp. CC9311, complete genomeglycolate oxidase subunit5e-21103
NC_008699:2294361:2303931230393123052861356Nocardioides sp. JS614, complete genomeD-lactate dehydrogenase (cytochrome)8e-21103
NC_010513:1443787:1462870146287014642581389Xylella fastidiosa M12 chromosome, complete genomeoxidoreductase2e-20102
NC_004129:926479:9392759392759420852811Pseudomonas fluorescens Pf-5, complete genomeoxidoreductase, FAD-binding2e-20102
NC_009617:3360990:3366532336653233679591428Clostridium beijerinckii NCIMB 8052 chromosome, complete genomeFAD linked oxidase domain-containing protein1e-20102
NC_012489:209016:2326132326132340131401Gemmatimonas aurantiaca T-27, complete genomeFAD linked oxidase1e-20102
NC_015733:3736104:3783876378387637853751500Pseudomonas putida S16 chromosome, complete genomeglycolate oxidase, GlcD subunit3e-20101
NC_008268:3418000:3421935342193534233051371Rhodococcus sp. RHA1, complete genomeprobable D-lactate dehydrogenase (cytochrome)3e-20101
NC_009253:389835:3908653908653922711407Desulfotomaculum reducens MI-1 chromosome, complete genomeFAD linked oxidase domain-containing protein4e-20101
NC_018681:5378197:5409649540964954110101362Nocardia brasiliensis ATCC 700358 chromosome, complete genomefad linked oxidase domain-containing protein4e-20100
NC_009376:420000:4372904372904387051416Pyrobaculum arsenaticum DSM 13514 chromosome, complete genomeD-lactate dehydrogenase6e-20100
NC_016885:1614427:1616573161657316179851413Pyrobaculum oguniense TE7 chromosome, complete genomeFAD/FMN-containing dehydrogenase9e-2099.8
NC_010003:123297:1328391328391342571419Petrotoga mobilis SJ95, complete genomeFAD linked oxidase domain protein1e-1999.4
NC_015436:1758257:1780777178077717821921416Spirochaeta coccoides DSM 17374 chromosome, complete genomeD-lactate dehydrogenase (cytochrome)2e-1999
NC_015151:1162647:1178190117819011795991410Vulcanisaeta moutnovskia 768-28 chromosome, complete genomeglycolate oxidase subunit D3e-1998.2
NC_017276:320000:3343853343853357281344Sulfolobus islandicus REY15A chromosome, complete genomeFAD linked oxidase domain-containing protein4e-1997.8
NC_012623:2369671:2373007237300723743621356Sulfolobus islandicus Y.N.15.51 chromosome, complete genomeFAD linked oxidase domain-containing protein4e-1997.8
NC_013769:316789:3308183308183321731356Sulfolobus islandicus L.D.8.5 chromosome, complete genomeD-lactate dehydrogenase5e-1997.4
NC_012622:327821:3371743371743385291356Sulfolobus islandicus Y.G.57.14 chromosome, complete genomeFAD linked oxidase domain-containing protein7e-1997.1
NC_011894:585637:5856375856375870551419Methylobacterium nodulans ORS 2060, complete genomeFAD linked oxidase domain protein1e-1895.9
NC_015275:4577642:4588652458865245900161365Clostridium lentocellum DSM 5427 chromosome, complete genomeD-lactate dehydrogenase (cytochrome)3e-1894.7
NC_011283:1811000:1857329185732918586841356Klebsiella pneumoniae 342 chromosome, complete genomeoxidase, FAD-binding3e-1791.3
NC_015859:1631573:1631573163157316329401368Corynebacterium variabile DSM 44702 chromosome, complete genomeoxidoreductase3e-1688.2
NC_015856:3436951:3451363345136334527751413Collimonas fungivorans Ter331 chromosome, complete genomeputative oxidoreductase7e-1687
NC_014328:2203437:2213403221340322148091407Clostridium ljungdahlii ATCC 49587 chromosome, complete genomeputative FAD/FMN-containing dehydrogenase1e-1586.7
NC_008309:555680:5556805556805569511272Haemophilus somnus 129PT, complete genomeglycerol-3-phosphate dehydrogenase, subunit C1e-1586.3
NC_004431:3513147:3541181354118135426801500Escherichia coli CFT073, complete genomeGlycolate oxidase subunit glcD2e-1585.5
NC_014328:2518081:2542973254297325443551383Clostridium ljungdahlii ATCC 49587 chromosome, complete genomeputative FAD/FMN-containing dehydrogenase2e-1482
NC_004741:3041294:3103190310319031046891500Shigella flexneri 2a str. 2457T, complete genome2e-1482
NC_015183:2483653:2488164248816424895521389Agrobacterium sp. H13-3 chromosome, complete genomeFAD linked oxidase-like protein3e-1481.6
NC_009749:937412:9415639415639429421380Francisella tularensis subsp. holarctica FTA, complete genomeFAD-linked oxidase5e-1480.9
NC_008369:939356:9435069435069448851380Francisella tularensis subsp. holarctica OSU18, complete genomeprobable FAD/FMN-dehydrogenase6e-1480.5
NC_007880:935670:9398219398219412001380Francisella tularensis subsp. holarctica, complete genomeFAD linked oxidase7e-1480.5
NC_018524:4988810:4994343499434349957101368Nocardiopsis alba ATCC BAA-2165 chromosome, complete genomeFAD linked oxidase, C-terminal domain protein1e-1379.3
NC_013854:2714033:2716318271631827177331416Azospirillum sp. B510, complete genomeFAD/FMN-containing dehydrogenases2e-1378.6
NC_018000:1914945:1935167193516719365191353Sinorhizobium fredii USDA 257 chromosome, complete genomeglycolate oxidase subunit GlcD5e-1377.4
NC_003911:633393:6561466561466575431398Silicibacter pomeroyi DSS-3, complete genomeoxidoreductase, FAD-binding6e-1377.4
NC_002940:919175:9417019417019429751275Haemophilus ducreyi 35000HP, complete genomeanaerobic glycerol-3-phosphate dehydrogenase, subunit C9e-1376.6
NC_013922:938091:9550969550969565321437Natrialba magadii ATCC 43099 chromosome, complete genomeglycerol-3-phosphate dehydrogenase, anaerobic, C subunit4e-1274.7
NC_008595:1349579:1370245137024513716121368Mycobacterium avium 104, complete genomeoxidoreductase, FAD-binding7e-1273.9
NC_014933:510164:5276335276335308633231Bacteroides helcogenes P 36-108 chromosome, complete genomeFAD linked oxidase domain protein2e-1172
NC_013769:2591065:2595244259524425964311188Sulfolobus islandicus L.D.8.5 chromosome, complete genomehypothetical protein2e-1068.9
NC_017276:2391645:2397506239750623986931188Sulfolobus islandicus REY15A chromosome, complete genomesn-glycerol-3-phosphate dehydrogenase subunit, glpC2e-1068.9
NC_017275:2519637:2525498252549825266851188Sulfolobus islandicus HVE10/4 chromosome, complete genomehypothetical protein2e-1068.6
NC_012726:2461102:2466963246696324681501188Sulfolobus islandicus M.16.4 chromosome, complete genomehypothetical protein4e-1067.8
NC_012622:2571812:2578075257807525792621188Sulfolobus islandicus Y.G.57.14 chromosome, complete genomehypothetical protein4e-1067.8
NC_012588:2483000:2486569248656924877561188Sulfolobus islandicus M.14.25 chromosome, complete genomehypothetical protein4e-1067.8
NC_012589:2605085:2609264260926426104511188Sulfolobus islandicus L.S.2.15, complete genomeprotein of unknown function DUF224 cysteine-rich region domain protein4e-1067.8
NC_012623:2680601:2684779268477926859661188Sulfolobus islandicus Y.N.15.51 chromosome, complete genomehypothetical protein4e-1067.8
NC_019962:960831:9880409880409893801341Natrinema pellirubrum DSM 15624, complete genomeglycerol-3-phosphate dehydrogenase, anaerobic, C subunit6e-1067.4
NC_012632:2564801:2570662257066225718491188Sulfolobus islandicus M.16.27 chromosome, complete genomehypothetical protein7e-1067
NC_019974:2541880:2541880254188025432411362Natronococcus occultus SP4, complete genomeglycerol 3-phosphate dehydrogenase (quinone) subunit C1e-0966.2
NC_017904:2162045:2162045216204521634301386Mycobacterium sp. MOTT36Y chromosome, complete genomedehydrogenase1e-0966.2
NC_014540:2828299:2854805285480528561931389Burkholderia sp. CCGE1003 chromosome 2, complete sequenceFAD linked oxidase domain-containing protein2e-0965.5
NC_009828:1530732:1530732153073215324411710Thermotoga lettingae TMO, complete genomeFAD linked oxidase domain protein5e-0964.3
NC_016947:2210339:2210339221033922117241386Mycobacterium intracellulare MOTT-02 chromosome, complete genomeputative dehydrogenase1e-0863.2
NC_002754:2391867:2404567240456724057541188Sulfolobus solfataricus P2, complete genomeGlycerol-3-phosphate dehydrogenase chain C (anaerobic) (glpC)1e-0863.2
NC_016948:2129335:2130002213000221313871386Mycobacterium intracellulare MOTT-64 chromosome, complete genomeputative dehydrogenase3e-0861.6
NC_014722:1084616:1110430111043011118751446Burkholderia rhizoxinica HKI 454, complete genomeFAD/FMN-containing dehydrogenases4e-0861.2
NC_007181:163640:1672631672631686391377Sulfolobus acidocaldarius DSM 639, complete genomeglycolate oxidase subunit4e-0861.2
NC_014831:2082304:2110694211069421126761983Thermaerobacter marianensis DSM 12885 chromosome, complete genomeFAD linked oxidase domain protein5e-0860.8
NC_014246:1402500:1405112140511214064311320Mobiluncus curtisii ATCC 43063 chromosome, complete genomesn-glycerol-3-phosphate dehydrogenase subunit C6e-0860.8
NC_010125:3393368:3414558341455834160271470Gluconacetobacter diazotrophicus PAl 5, complete genomeputative D-lactate dehydrogenase2e-0759.3
NC_012883:695652:7065837065837079801398Thermococcus sibiricus MM 739, complete genomeAlkyldihydroxyacetonephosphate synthase2e-0655.8
NC_012982:1597697:1597697159769715993101614Hirschia baltica ATCC 49814, complete genomeFAD linked oxidase domain protein2e-0655.5
NC_014834:614890:6501286501286517801653Rhodopseudomonas palustris DX-1 chromosome, complete genomeFAD linked oxidase domain-containing protein3e-0655.1
NC_015314:89815:9812198121997461626Pseudonocardia dioxanivorans CB1190 plasmid pPSED01, completeAlkylglycerone-phosphate synthase4e-0654.7