Pre_GI: BLASTP Hits

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Query: NC_017328:2586171:2597110 Shigella flexneri 2002017 chromosome, complete genome

Start: 2597110, End: 2597931, Length: 822

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections. This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. Human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. Extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_004337:2548288:255947225594722560293822Shigella flexneri 2a str. 301, complete genomesimilar to glutamate racemase1e-157555
NC_008258:2542863:255407825540782554770693Shigella flexneri 5 str. 8401, complete genomehypothetical protein1e-130465
NC_014392:1935130:194685719468571947660804Caldicellulosiruptor obsidiansis OB47 chromosome, complete genomeglutamate racemase3e-40165
NC_014376:597000:597062597062597880819Clostridium saccharolyticum WM1 chromosome, complete genomeglutamate racemase2e-35149
NC_013740:15401:359193591936713795Acidaminococcus fermentans DSM 20731, complete genomeglutamate racemase3e-35148
NC_010424:1563033:159117515911751591996822Candidatus Desulforudis audaxviator MP104C, complete genomeglutamate racemase7e-35147
NC_014363:427393:450556450556451329774Olsenella uli DSM 7084 chromosome, complete genomeglutamate racemase1e-31137
NC_020209:47504:117941117941118735795Pseudomonas poae RE*1-1-14, complete genomeglutamate racemase4e-31135
NC_012660:819381:841697841697842491795Pseudomonas fluorescens SBW25 chromosome, complete genomeglutamate racemase4e-31135
NC_014171:4317520:435183043518304352639810Bacillus thuringiensis BMB171 chromosome, complete genomeglutamate racemase4e-30131
NC_012659:4273606:429097242909724291781810Bacillus anthracis str. A0248, complete genomeglutamate racemase1e-29130
NC_003997:4273579:429094542909454291754810Bacillus anthracis str. Ames, complete genomeglutamate racemase1e-29130
NC_013791:579842:597334597334598143810Bacillus pseudofirmus OF4 chromosome, complete genomeglutamate racemase1e-29129
NC_008027:896000:914730914730915527798Pseudomonas entomophila L48, complete genomeglutamate racemase6e-29127
NC_018664:159291:161074161074161889816Clostridium acidurici 9a chromosome, complete genomeglutamate racemase MurI8e-29127
NC_006322:2851215:286963428696342870452819Bacillus licheniformis ATCC 14580, complete genomeRacE1e-28127
NC_006270:2850354:286942128694212870236816Bacillus licheniformis ATCC 14580, complete genomeglutamate racemase1e-28127
NC_018870:427357:427357427357428238882Thermacetogenium phaeum DSM 12270 chromosome, complete genomeglutamate racemase MurI4e-28125
NC_010545:1691999:171368817136881714554867Corynebacterium urealyticum DSM 7109, complete genomehypothetical protein1e-27124
NC_015389:1610756:163012616301261631055930Coriobacterium glomerans PW2 chromosome, complete genomeglutamate racemase1e-27123
NC_015410:1202370:122743312274331228248816Pseudomonas mendocina NK-01 chromosome, complete genomeglutamate racemase2e-27122
NC_009613:2353185:236321923632192363998780Flavobacterium psychrophilum JIP02/86, complete genomeglutamate racemase6e-27121
NC_013851:759500:771805771805772653849Allochromatium vinosum DSM 180 chromosome, complete genomeglutamate racemase7e-27121
NC_009434:3413461:342588634258863426680795Pseudomonas stutzeri A1501, complete genomeglutamate racemase7e-27120
NC_010376:606000:609188609188609973786Finegoldia magna ATCC 29328, complete genomeglutamate racemase4e-26118
NC_014393:4646000:466042546604254661204780Clostridium cellulovorans 743B chromosome, complete genomeglutamate racemase4e-26118
NC_015177:2271499:228643022864302287242813Pedobacter saltans DSM 12145 chromosome, complete genomeglutamate racemase9e-26117
NC_008555:1204000:120467812046781205478801Listeria welshimeri serovar 6b str. SLCC5334, complete genomeglutamate racemase2e-25116
NC_014816:2446236:245375924537592454613855Asticcacaulis excentricus CB 48 chromosome 1, complete sequenceglutamate racemase4e-25115
NC_013406:5020690:503404850340485034824777Paenibacillus sp. Y412MC10 chromosome, complete genomeglutamate racemase6e-25114
NC_015856:3912195:391444439144443915316873Collimonas fungivorans Ter331 chromosome, complete genomeglutamate racemase1e-24113
NC_016803:2431672:243302724330272433866840Desulfovibrio desulfuricans ND132 chromosome, complete genomeglutamate racemase2e-23109
NC_016641:373623:394657394657395442786Paenibacillus terrae HPL-003 chromosome, complete genomeglutamate racemase2e-23109
NC_013166:194614:196632196632197450819Kangiella koreensis DSM 16069, complete genomeglutamate racemase2e-23109
NC_010524:2761394:276914927691492769967819Leptothrix cholodnii SP-6, complete genomeglutamate racemase2e-23109
NC_016516:1751336:177136317713631772217855Propionibacterium acnes TypeIA2 P.acn33 chromosome, completeglutamate racemase1e-22106
NC_018515:4442500:445272544527254453621897Desulfosporosinus meridiei DSM 13257 chromosome, complete genomeglutamate racemase3e-22105
NC_019896:1483073:148786214878621488662801Bacillus subtilis subsp. subtilis str. BSP1 chromosome, completeGlutamate racemase 25e-22105
NC_014039:1766049:178250317825031783357855Propionibacterium acnes SK137 chromosome, complete genomeglutamate racemase8e-22104
NC_015161:2060369:2080000208000020810971098Deinococcus proteolyticus MRP chromosome, complete genomeGlutamate racemase2e-21102
NC_008309:1628939:164593516459351646738804Haemophilus somnus 129PT, complete genomeglutamate racemase5e-21101
NC_009648:4656187:466218346621834662965783Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomeglutamate racemase6e-21101
NC_009659:997779:998489998489999343855Janthinobacterium sp. Marseille chromosome, complete genomeglutamate racemase1e-20100
NC_014633:583858:600692600692601477786Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequenceglutamate racemase2e-2099.8
NC_014153:2187409:220763422076342208425792Thiomonas intermedia K12 chromosome, complete genomeglutamate racemase4e-2098.6
NC_012039:53497:666316663167371741Campylobacter lari RM2100, complete genomeglutamate racemase1e-1996.7
NC_017063:775337:780539780539781306768Helicobacter pylori ELS37 chromosome, complete genomeglutamate racemase5e-1995.1
NC_008599:596849:600434600434601195762Campylobacter fetus subsp. fetus 82-40, complete genomeglutamate racemase6e-1994.7
NC_014256:683384:721382721382722149768Helicobacter pylori B8 chromosome, complete genomeglutamate racemase1e-1893.6
NC_008390:2448379:246933624693362470199864Burkholderia cepacia AMMD chromosome 1, complete sequenceglutamate racemase2e-1893.2
NC_005810:3493607:349981934998193500682864Yersinia pestis biovar Microtus str. 91001, complete genomeglutamate racemase3e-1892.8
NC_003198:3586000:360045136004513601233783Salmonella enterica subsp. enterica serovar Typhi str. CT18,glutamate racemase3e-1892.4
NC_006511:4119332:412364941236494124500852Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCglutamate racemase4e-1892
NC_014666:7152782:7154964715496471559951032Frankia sp. EuI1c chromosome, complete genomeglutamate racemase5e-1891.7
NC_013959:83992:102149102149102955807Sideroxydans lithotrophicus ES-1 chromosome, complete genomeglutamate racemase2e-1789.4
CU928160:4248621:425465942546594255516858Escherichia coli IAI1 chromosome, complete genomeglutamate racemase6e-1788.2
NC_010468:4455201:446578944657894466577789Escherichia coli ATCC 8739, complete genomeglutamate racemase1e-1687
NC_010473:4256000:426314842631484264005858Escherichia coli str. K-12 substr. DH10B, complete genomeglutamate racemase1e-1687
NC_000913:4159090:416345141634514164308858Escherichia coli K12, complete genomeglutamate racemase1e-1687
NC_011297:1167615:118510611851061185906801Dictyoglomus thermophilum H-6-12, complete genomeglutamate racemase2e-1686.7
NC_010322:6037566:604850760485076049397891Pseudomonas putida GB-1 chromosome, complete genomeglutamate racemase2e-1686.3
NC_019907:539749:567518567518568351834Liberibacter crescens BT-1 chromosome, complete genomeglutamate racemase3e-1685.9
NC_016830:530397:540835540835541713879Pseudomonas fluorescens F113 chromosome, complete genomeputative glutamate racemase3e-1582.4
NC_011244:94756:109627109627110391765Borrelia recurrentis A1, complete genomeglutamate racemase3e-1375.9
NC_015276:2171355:217758421775842178414831Marinomonas mediterranea MMB-1 chromosome, complete genomeGlutamate racemase6e-1374.7
NC_008710:79100:973919739198155765Borrelia turicatae 91E135, complete genomeglutamate racemase1e-1273.6
NC_011184:2723000:274010627401062740891786Vibrio fischeri MJ11 chromosome I, complete sequenceglutamate racemase4e-1272
NC_014909:662500:679702679702680547846Candidatus Blochmannia vafer str. BVAF chromosome, complete genomeglutamate racemase9e-1167.8
NC_010673:82586:974679746798231765Borrelia hermsii DAH, complete genomeglutamate racemase3e-0962.8
NC_018750:770500:793584793584794378795Streptomyces venezuelae ATCC 10712, complete genomeGlutamate racemase3e-0756.2