Pre_GI Gene

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Host: NC_010322 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_010322:6037566 Pseudomonas putida GB-1 chromosome, complete genome

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Pseudomonas putida strain GB-1, a fresh water, Gram-negative gamma-proteobacterium, is a genetically tractable, robust manganese (Mn) oxidizer, and as such, is an ideal model for unraveling the catalytic mechanism for, and the molecular regulation of Mn(IV) oxide production and its eventual accumulation on the cell surface at the onset of stationary phase. Since its isolation from Green Bay nearly 20 years ago by Ken Nealson’s group (then at the Center for Great Lakes Studies, Univ. Wisconsin-Milwaukee, USA), it has been the non spore-forming, model organism (along with the closely-related strain MnB1) for molecular genetic studies of Mn(II) oxidization, protein transport and biofilm formation and for biochemical studies on protein purification and Mn(III)-pyoverdine binding. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
60375666038537972cobalamin synthesis protein P47KQuickGO ontologyBLASTP
60385786039204627hypothetical proteinBLASTP
603920160404061206cobalamin synthesis protein P47KQuickGO ontologyBLASTP
60405216040901381hypothetical proteinBLASTP
60409276041832906putative GTP cyclohydrolaseQuickGO ontologyBLASTP
60418166042343528hypothetical protein
604247760439161440cardiolipin synthetaseQuickGO ontologyBLASTP
604398160451651185cyclopropane-fatty-acyl-phospholipid synthaseQuickGO ontologyBLASTP
604537360467731401dihydrolipoamide dehydrogenaseQuickGO ontologyBLASTP
604715760483801224major facilitator superfamily transporterQuickGO ontologyBLASTP
60485076049397891glutamate racemaseQuickGO ontologyBLASTP
60494096050383975hypothetical proteinBLASTP
60514796051823345hypothetical proteinBLASTP
60518316052526696hypothetical proteinBLASTP
605403660554751440hypothetical protein
60554826056171690peptidase M23BQuickGO ontologyBLASTP
60569306057208279transposase IS3IS911 family proteinQuickGO ontologyBLASTP
60572476058080834integrase catalytic subunitQuickGO ontologyBLASTP
60580966058482387hypothetical proteinBLASTP
605863260604671836glucosamine--fructose-6-phosphate aminotransferaseQuickGO ontologyBLASTP
60604716061247777DeoR family transcriptional regulatorQuickGO ontologyBLASTP
606155360629201368UDP-N-acetylglucosamine pyrophosphorylaseQuickGO ontologyBLASTP
60630416063460420F0F1 ATP synthase subunit epsilonQuickGO ontologyBLASTP
606350460648801377F0F1 ATP synthase subunit betaQuickGO ontologyBLASTP
60649086065768861F0F1 ATP synthase subunit gammaQuickGO ontologyBLASTP
606581760673611545F0F1 ATP synthase subunit alphaQuickGO ontologyBLASTP
60673836067919537F0F1 ATP synthase subunit deltaQuickGO ontologyBLASTP
60679326068402471F0F1 ATP synthase subunit BQuickGO ontologyBLASTP
60684596068716258F0F1 ATP synthase subunit CQuickGO ontologyBLASTP
60688616069730870F0F1 ATP synthase subunit AQuickGO ontologyBLASTP
60697476070154408F0F1 ATP synthase subunit IQuickGO ontologyBLASTP
60703046071176873parB-like partition proteinQuickGO ontologyBLASTP
60711866071977792cobyrinic acid ac-diamide synthaseQuickGO ontologyBLASTP
6071996607264665116S rRNA methyltransferase GidBQuickGO ontologyBLASTP
607264360745351893tRNA uridine 5-carboxymethylaminomethyl modification protein GidAQuickGO ontologyBLASTP