Pre_GI: BLASTP Hits

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Query: NC_016822:246715:252925 Shigella sonnei 53G, complete genome

Start: 252925, End: 254277, Length: 1353

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016902:3863932:3869646386964638709981353Escherichia coli KO11FL chromosome, complete genomeImpA domain-containing protein0833
CP002185:234719:2409052409052422571353Escherichia coli W, complete genomeT6SS-associated protein0833
CP002516:3863932:3869646386964638709981353Escherichia coli KO11, complete genomeImpA domain protein0833
NC_011740:1991941:2008972200897220104771506Escherichia fergusonii ATCC 35469, complete genomehypothetical protein0706
NC_011294:1085447:1106007110600711073981392Salmonella enterica subsp. enterica serovar Enteritidis strhypothetical protein1e-167589
NC_016831:1905289:1908761190876119101551395Salmonella enterica subsp. enterica serovar Gallinarum/pullorumhypothetical protein2e-167589
NC_011149:1077589:1093986109398610953471362Salmonella enterica subsp. enterica serovar Agona str. SL483,ImpA domain protein3e-167588
NC_011205:1186097:1206665120666512080291365Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853ImpA domain-containing protein2e-167588
NC_011274:1094379:1114918111491811165491632Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91hypothetical protein2e-166585
NC_011149:1077589:1090415109041510916501236Salmonella enterica subsp. enterica serovar Agona str. SL483,ImpA domain protein4e-104378
NC_010465:429095:4382594382594395661308Yersinia pseudotuberculosis YPIII, complete genomeImpA domain protein9e-79294
NC_010634:4234932:4245199424519942465121314Yersinia pseudotuberculosis PB1/+, complete genomeImpA domain-containing protein8e-78291
NC_009708:372422:3816133816133829261314Yersinia pseudotuberculosis IP 31758 chromosome, complete genomeImpA domain-containing protein1e-77290
NC_006155:4302826:4314102431410243154151314Yersinia pseudotuberculosis IP 32953, complete genomehypothetical protein1e-77290
NC_012962:293976:3007953007953021411347Photorhabdus asymbiotica, complete genomehypothetical protein5e-77288
NC_014228:4331327:4336814433681443382141401Xenorhabdus nematophila ATCC 19061, complete genomeConserved Hypothetical protein with ImpA domain (probable component of SST VI cluster)2e-71270
NC_017168:1631052:164021616402161640998783Yersinia pestis A1122 chromosome, complete genomehypothetical protein6e-53208
NC_017154:3898925:390808939080893908871783Yersinia pestis D106004 chromosome, complete genomehypothetical protein6e-53208
NC_014029:3958811:396797539679753968757783Yersinia pestis Z176003 chromosome, complete genomehypothetical protein6e-53208
NC_003143:4006884:401604840160484016830783Yersinia pestis CO92, complete genomehypothetical protein6e-53208
NC_009381:222735:231890231890232672783Yersinia pestis Pestoides F chromosome, complete genomehypothetical protein4e-52205
NC_017265:4265659:427741042774104278192783Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,hypothetical protein8e-52204
NC_013892:274297:2885842885842899751392Xenorhabdus bovienii SS-2004 chromosome, complete genomehypothetical protein8e-48191
NC_012962:4427000:4429950442995044313201371Photorhabdus asymbiotica, complete genomehypothetical protein3e-46186
NC_015968:4117835:4134482413448241358761395Enterobacter asburiae LF7a chromosome, complete genomeImpA domain-containing protein2e-41170
NC_009708:2788855:2808154280815428095211368Yersinia pseudotuberculosis IP 31758 chromosome, complete genomeImpA domain-containing protein5e-41169
NC_008570:2014151:2017683201768320191131431Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genomeImpA domain protein7e-41168
NC_010465:2820500:2838599283859928399661368Yersinia pseudotuberculosis YPIII, complete genomeImpA domain protein2e-40167
NC_008149:2773139:2793768279376827951351368Yersinia pestis Nepal516, complete genomehypothetical protein5e-39162
NC_004088:2937077:2957706295770629590731368Yersinia pestis KIM, complete genomehypothetical protein5e-39162
NC_009381:1655731:1675037167503716764041368Yersinia pestis Pestoides F chromosome, complete genomehypothetical protein5e-39162
NC_014029:1760948:1763066176306617644331368Yersinia pestis Z176003 chromosome, complete genomehypothetical protein5e-39162
NC_017168:3948514:3969143396914339705101368Yersinia pestis A1122 chromosome, complete genomehypothetical protein5e-39162
NC_017265:2557476:2578105257810525794721368Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,hypothetical protein5e-39162
NC_006155:1807902:1807902180790218092691368Yersinia pseudotuberculosis IP 32953, complete genomehypothetical protein2e-37156
NC_013421:1173051:1176722117672211781581437Pectobacterium wasabiae WPP163, complete genomeImpA domain protein3e-35150
NC_017060:125480:1574611574611588551395Rahnella aquatilis HX2 plasmid PRA1, complete sequenceImpA domain-containing protein3e-34146
NC_016514:1627664:1639808163980816411991392Enterobacter cloacae EcWSU1 chromosome, complete genomehypothetical protein2e-30134
NC_013971:465318:4783454783454797451401Erwinia amylovora ATCC 49946 chromosome, complete genomehypothetical protein2e-30133
NC_013961:3269368:3291637329163732930371401Erwinia amylovora, complete genomeCOG3515: Uncharacterized protein conserved in bacteria ImpA-related N-terminal domain2e-30133
NC_011283:2103500:2123207212320721245921386Klebsiella pneumoniae 342 chromosome, complete genomeImpA domain-containing protein2e-29130
CU928145:3360967:3396575339657533979421368Escherichia coli 55989 chromosome, complete genomeconserved hypothetical protein2e-28127
NC_011748:3360967:3396575339657533979421368Escherichia coli 55989, complete genomehypothetical protein2e-28127
NC_014121:1822895:1844710184471018460261317Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completetype VI secretion system protein VasL2e-26120
NC_009436:3117661:3147681314768131490961416Enterobacter sp. 638, complete genomeImpA domain-containing protein2e-25117
NC_014107:171170:190533190533191132600Enterobacter cloacae subsp. cloacae ATCC 13047 plasmid pECL_A,hypothetical protein9e-25115
NC_011742:3057444:3062907306290730642831377Escherichia coli S88 chromosome, complete genomehypothetical protein3e-24113
NC_007946:3125577:3131040313104031324161377Escherichia coli UTI89, complete genomehypothetical protein3e-24113
NC_008253:2965573:2971228297122829726041377Escherichia coli 536, complete genomehypothetical protein3e-24113
NC_014837:3766426:3785432378543237864751044Pantoea sp. At-9b chromosome, complete genomeImpA domain-containing protein2e-20100
NC_005126:349658:379498379498380175678Photorhabdus luminescens subsp. laumondii TTO1, complete genome3e-1893.2
NC_009381:222735:232579232579233202624Yersinia pestis Pestoides F chromosome, complete genomehypothetical protein2e-1687.4
NC_017265:4265659:427688042768804277413534Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,hypothetical protein1e-1275.1
NC_017154:3898925:390886839088683909401534Yersinia pestis D106004 chromosome, complete genomehypothetical protein1e-1275.1
NC_014029:3958811:396875439687543969287534Yersinia pestis Z176003 chromosome, complete genomehypothetical protein1e-1275.1
NC_003143:4006884:401682740168274017360534Yersinia pestis CO92, complete genomehypothetical protein1e-1275.1