Pre_GI: BLASTP Hits

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Query: NC_013199:392450:411366 Lactobacillus rhamnosus Lc 705, complete genome

Start: 411366, End: 411860, Length: 495

Host Lineage: Lactobacillus rhamnosus; Lactobacillus; Lactobacillaceae; Lactobacillales; Firmicutes; Bacteria

General Information: They are commonly found in the oral, vaginal, and intestinal regions of many animals. They are important industrial microbes that contribute to the production of cheese, yogurt, and other products such as fermented milks, all stemming from the production of lactic acid, which inhibits the growth of other organisms as well as lowering the pH of the food product. Industrial production requires the use of starter cultures, which are carefully cultivated, created, and maintained, which produce specific end products during fermentation that impart flavor to the final product, as well as contributing important metabolic reactions, such as the breakdown of milk proteins during cheese production. The end product of fermentation, lactic acid, is also being used as a starter molecule for complex organic molecule syntheses. Lactobacillus rhamnosus is used in the manufacture of cheese and other dairy products to aid ripening and enhance flavors. This organism has also been shown to stimulate the immune system and have antibacterial activity against intestinal pathogens, indicating that it may be useful as a probiotic.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016818:3148000:314822731482273149189963Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completePTS system mannose/fructose/sorbose family transporter subunit IIB2e-47187
NC_017047:3212000:321229332122933213255963Rahnella aquatilis HX2 chromosome, complete genomePTS system mannose-specific transporter subunit IIAB7e-47186
NC_015061:3147691:314769131476913148653963Rahnella sp. Y9602 chromosome, complete genomePTS system, mannose/fructose/sorbose family, IIB subunit7e-47186
NC_012880:2399205:240136324013632402304942Dickeya dadantii Ech703, complete genomePTS system, mannose/fructose/sorbose family, IIB subunit2e-46184
NC_015425:841754:863643863643864116474Clostridium botulinum BKT015925 chromosome, complete genomePTS system mannose/fructose/sorbose family transporter subunit IIB1e-44178
NC_009617:4436837:445214844521484452639492Clostridium beijerinckii NCIMB 8052 chromosome, complete genomePTS system mannose/fructose/sorbose family transporter subunit IIB3e-41167
NC_013192:2434664:245368324536832454174492Leptotrichia buccalis DSM 1135, complete genomePTS system, mannose/fructose/sorbose family, IIB subunit1e-37155
NC_016612:2902628:292860929286092929085477Klebsiella oxytoca KCTC 1686 chromosome, complete genomePTS system fructose-specific transporter subunit IIB4e-37153
NC_015975:1936504:195217819521781953164987Lactobacillus ruminis ATCC 27782 chromosome, complete genomePTS system, mannose-specific IIAB component1e-32139
NC_015214:437733:4748524748524758621011Lactobacillus acidophilus 30SC chromosome, complete genomePTS system, mannose-specific IIAB component6e-33139
NC_014724:439594:4752374752374762471011Lactobacillus amylovorus GRL 1112 chromosome, complete genomePTS system, mannose-specific IIAB component6e-33139
NC_014106:419511:4506944506944517011008Lactobacillus crispatus ST1, complete genomePTS system, mannose-specific IIAB component2e-32138
NC_018528:1681060:1689111168911116901211011Lactobacillus helveticus R0052 chromosome, complete genomePTS system mannost-specific transporter subunits IIAB5e-32136
NC_011660:2509362:251816925181692519134966Listeria monocytogenes HCC23 chromosome, complete genomePTS system mannose-specific eiiab component (eiiab-man)7e-32136
NC_015602:1339067:1346038134603813470451008Lactobacillus kefiranofaciens ZW3 chromosome, complete genomeprotein-N(pi)-phosphohistidine--sugar phosphotransferase1e-31135
NC_005362:1870620:187806118780611879056996Lactobacillus johnsonii NCC 533, complete genomephosphoenolpyruvate-dependent sugar phosphotransferase system EIIAB, probable mannose specific1e-31135
NC_013504:1648551:165705116570511658046996Lactobacillus johnsonii FI9785 chromosome, complete genomephosphoenolpyruvate-dependent sugar phosphotransferase system EIIAB, probably mannose specific1e-31135
NC_013192:469771:485291485291486280990Leptotrichia buccalis DSM 1135, complete genomePTS system, mannose/fructose/sorbose family, IIA subunit1e-31135
NC_008530:1775841:178186117818611782859999Lactobacillus gasseri ATCC 33323, complete genomePhosphotransferase system, mannose/fructose-specific component IIA8e-32135
NC_010723:1379256:139787513978751398852978Clostridium botulinum E3 str. Alaska E43, complete genomePTS system, mannose/fructose/sorbose family, IIB component2e-30131
NC_008261:967973:969127969127970107981Clostridium perfringens ATCC 13124, complete genomePTS system, mannose/fructose/sorbose family, IIB component7e-30129
NC_015975:1936504:195319519531951953710516Lactobacillus ruminis ATCC 27782 chromosome, complete genomePTS system, IIB component7e-29126
NC_010380:124655:145788145788146264477Streptococcus pneumoniae Hungary19A-6, complete genomephosphotransferase system sugar-specific eiib component2e-25114
NC_014498:99015:120148120148120624477Streptococcus pneumoniae 670-6B chromosome, complete genomePTS system sugar-specific transporter subunit EIIB2e-25114
NC_015519:270637:289314289314289790477Tepidanaerobacter sp. Re1 chromosome, complete genomePTS system sorbose subfamily transporter subunit IIB1e-23108
NC_004337:3249791:327073932707393271248510Shigella flexneri 2a str. 301, complete genomecytoplasmic transport protein N-acetylgalactosamine-specific IIB component 2 (EIIB-AGA)4e-23107
NC_004741:3240909:326185732618573262366510Shigella flexneri 2a str. 2457T, complete genomecytoplasmic transport protein N-acetylgalactosamine-specific IIB component 2 (EIIB-AGA)4e-23107
NC_013941:3884725:390905839090583909567510Escherichia coli O55:H7 str. CB9615 chromosome, complete genomePTS system subunit IIB4e-23107
NC_017328:3289853:331080233108023311311510Shigella flexneri 2002017 chromosome, complete genomePTS system, cytoplasmic, N-acetylgalactosamine-specific IIB component 24e-23107
NC_010473:3354052:337598433759843376457474Escherichia coli str. K-12 substr. DH10B, complete genomeN-acetylgalactosamine-specific enzyme IIB component of PTS3e-23107
AC_000091:3258377:328007232800723280545474Escherichia coli W3110 DNA, complete genomeN-acetylgalactosamine-specific enzyme IIB component of PTS3e-23107
NC_012759:3143455:316538731653873165860474Escherichia coli BW2952 chromosome, complete genomePTS system N-acetylgalactosamine-specific transporter subunit IIB3e-23107
CP002185:3475991:349792134979213498394474Escherichia coli W, complete genomeN-acetylgalactosamine-specific enzyme IIB component of PTS3e-23107
NC_012967:3191319:321314532131453213618474Escherichia coli B str. REL606 chromosome, complete genomePTS system N-acetylgalactosamine-specific transporter subunit IIB3e-23107
NC_005126:949226:967712967712968194483Photorhabdus luminescens subsp. laumondii TTO1, complete genomePTS system, N-acetylgalactosamine-specific IIB component 2 (EIIB-AGA') (N-acetylgalactosamine-permease IIB component 2) (Phosphotransferase enzyme II,4e-2097.1
NC_012962:869295:882141882141882623483Photorhabdus asymbiotica, complete genomepts system, n-acetylgalactosamine-specific iib component 2 (eiib-aga' (n-acetylgalactosamine-permease iib component 2) (phosphotransferas enzyme ii, b6e-2096.7
NC_011294:4604283:462758746275874628048462Salmonella enterica subsp. enterica serovar Enteritidis strPTS system transporter subunit B2e-1995.1
NC_014377:1897857:191102719110271911503477Thermosediminibacter oceani DSM 16646 chromosome, complete genomePTS system sorbose subfamily IIB component2e-1994.7
NC_009089:581655:582091582091582564474Clostridium difficile 630, complete genomePTS system, IIb component3e-1994.4
NC_015389:1977736:200771220077122008200489Coriobacterium glomerans PW2 chromosome, complete genomePTS system sorbose subfamily IIB component7e-1993.2
NC_020063:4653422:466827946682794668776498Enterobacteriaceae bacterium strain FGI 57, complete genomephosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB2e-1891.7
NC_010067:1116148:112511011251101125607498Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein2e-1891.3
NC_015389:1070500:110510911051091105606498Coriobacterium glomerans PW2 chromosome, complete genomePTS system sorbose subfamily IIB component9e-1889.4
NC_005139:518760:525878525878526366489Vibrio vulnificus YJ016 chromosome I, complete sequencephosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB1e-1789
NC_015389:1782825:179673517967351797214480Coriobacterium glomerans PW2 chromosome, complete genomeProtein-N(pi)-phosphohistidine--sugarphosphotran sferase2e-1788.2
NC_016023:875416:885400885400885882483Bacillus coagulans 36D1 chromosome, complete genomePTS system sorbose subfamily transporter subunit IIB3e-1787.8
NC_011742:3799788:380977838097783810263486Escherichia coli S88 chromosome, complete genomePTS system mannose/fructose-specific transporter subunit IIA3e-1787.4
NC_008563:3888232:389503038950303895515486Escherichia coli APEC O1, complete genomehypothetical protein3e-1787.4
NC_007946:3855445:386224338622433862728486Escherichia coli UTI89, complete genomeputative phosphotransferase system protein3e-1787.4
NC_002937:1706000:171632817163281716789462Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, completePTS system, IIB component5e-1787
NC_017046:3991551:399155139915513992075525Salmonella enterica subsp. enterica serovar Typhimurium str. 798PTS system transporter protein8e-1786.3
NC_020409:560278:572726572726573193468Desulfovibrio piezophilus str. nov C1TLV30 chromosome, completePTS system sorbose subfamily IIB component8e-1786.3
NC_004631:3841975:386239538623953862880486Salmonella enterica subsp. enterica serovar Typhi Ty2, completeputative PTS system protein8e-1786.3
NC_006511:3759550:375955037595503760035486Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCputative PTS system protein8e-1786.3
NC_011083:3985618:398561839856183986103486Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,PTS system sorbose subfamily IIB component8e-1786.3
NC_011149:3895921:389592138959213896406486Salmonella enterica subsp. enterica serovar Agona str. SL483,PTS system sorbose subfamily IIB component8e-1786.3
NC_003198:3855157:387690538769053877390486Salmonella enterica subsp. enterica serovar Typhi str. CT18,putative PTS system protein8e-1786.3
NC_014334:2696000:270562927056292706099471Lactobacillus casei str. Zhang chromosome, complete genomePTS system sorbose subfamily transporter subunit IIB2e-1685.1
NC_009442:1158268:116603411660341166525492Streptococcus suis 05ZYH33 chromosome, complete genomephosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB2e-1685.1
NC_013198:394000:417573417573418049477Lactobacillus rhamnosus GG, complete genomePTS system, IIB component2e-1684.7
NC_015389:809474:818601818601819104504Coriobacterium glomerans PW2 chromosome, complete genomePTS system sorbose subfamily IIB component3e-1684
NC_014377:1897857:190819819081981908701504Thermosediminibacter oceani DSM 16646 chromosome, complete genomePTS system sorbose subfamily IIB component5e-1683.6
NC_011134:1222739:122619612261961226687492Streptococcus equi subsp. zooepidemicus str. MGCS10565, completePTS system mannose/fructose family IIB component5e-1683.6
NC_012470:853561:883776883776884267492Streptococcus equi subsp. zooepidemicus, complete genomesugar phosphotransferase system (PTS), mannose/fructose family, IIB component5e-1683.6
NC_014844:1634985:165960816596081660072465Desulfovibrio aespoeensis Aspo-2 chromosome, complete genomePTS system sorbose subfamily IIB component9e-1682.8
NC_009792:4693152:471149447114944711979486Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein1e-1479
NC_016023:1769925:178681217868121787303492Bacillus coagulans 36D1 chromosome, complete genomePTS system sorbose subfamily transporter subunit IIB2e-1271.2
NC_013171:1808000:182302518230251823498474Anaerococcus prevotii DSM 20548, complete genomeprotein-N(pi)-phosphohistidine--sugar phosphotransferase2e-1168.6
NC_015424:2357600:237784523778452378249405Aeromonas veronii B565 chromosome, complete genomefructose-specific phosphotransferase enzyme iib component3e-1064.7
NC_015968:3053565:306397530639753064280306Enterobacter asburiae LF7a chromosome, complete genomePTS system sorbose subfamily transporter subunit IIB5e-0960.5
NC_014758:1489761:149108514910851491573489Calditerrivibrio nitroreducens DSM 19672 chromosome, completepts system sorbose subfamily iib component2e-0755.5