Pre_GI: BLASTP Hits

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Query: NC_013199:392450:395358 Lactobacillus rhamnosus Lc 705, complete genome

Start: 395358, End: 396098, Length: 741

Host Lineage: Lactobacillus rhamnosus; Lactobacillus; Lactobacillaceae; Lactobacillales; Firmicutes; Bacteria

General Information: They are commonly found in the oral, vaginal, and intestinal regions of many animals. They are important industrial microbes that contribute to the production of cheese, yogurt, and other products such as fermented milks, all stemming from the production of lactic acid, which inhibits the growth of other organisms as well as lowering the pH of the food product. Industrial production requires the use of starter cultures, which are carefully cultivated, created, and maintained, which produce specific end products during fermentation that impart flavor to the final product, as well as contributing important metabolic reactions, such as the breakdown of milk proteins during cheese production. The end product of fermentation, lactic acid, is also being used as a starter molecule for complex organic molecule syntheses. Lactobacillus rhamnosus is used in the manufacture of cheese and other dairy products to aid ripening and enhance flavors. This organism has also been shown to stimulate the immune system and have antibacterial activity against intestinal pathogens, indicating that it may be useful as a probiotic.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_020207:1346579:136319713631971363925729Enterococcus faecium NRRL B-2354, complete genomeTranscriptional regulator2e-68258
NC_009617:3647500:366042136604213661161741Clostridium beijerinckii NCIMB 8052 chromosome, complete genomeGntR family transcriptional regulator2e-28125
NC_020291:5093138:511164951116495112383735Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomeregulatory protein GntR, HTH3e-27122
NC_015145:1107500:112673811267381127520783Arthrobacter phenanthrenivorans Sphe3 chromosome, complete genomeGntR family transcriptional regulator2e-1169.3
NC_008525:1493317:149648314964831497184702Pediococcus pentosaceus ATCC 25745, complete genomeTranscriptional regulator1e-1066.6
NC_013510:39975:487834878349517735Thermomonospora curvata DSM 43183, complete genometranscriptional regulator, GntR family2e-1066.2
NC_015975:380500:405127405127405825699Lactobacillus ruminis ATCC 27782 chromosome, complete genomeGntR family transcriptional regulator8e-1064.3
NC_018515:3600869:362844736284473629145699Desulfosporosinus meridiei DSM 13257 chromosome, complete genometranscriptional regulator1e-0963.9
NC_016935:3819500:382680038268003827531732Paenibacillus mucilaginosus 3016 chromosome, complete genometranscriptional regulator1e-0963.5
NC_009328:1903291:1904069190406919051631095Geobacillus thermodenitrificans NG80-2 chromosome, complete genomeprotein AraR1e-0963.5
NC_015690:3269000:327636032763603277091732Paenibacillus mucilaginosus KNP414 chromosome, complete genometranscriptional regulator1e-0963.5
NC_008497:556365:574068574068574769702Lactobacillus brevis ATCC 367, complete genomeTranscriptional regulator1e-0963.2
NC_007929:1290568:129384012938401294538699Lactobacillus salivarius subsp. salivarius UCC118, complete genomeTranscriptional regulator, GntR family1e-0963.2
NC_014479:2505823:252667125266712527399729Bacillus subtilis subsp. spizizenii str. W23 chromosome, completeGntR family transcriptional regulator2e-0962.8
NC_013510:5499447:551960755196075520026420Thermomonospora curvata DSM 43183, complete genometranscriptional regulator, GntR family3e-0962.4
NC_018750:2270314:227346522734652274223759Streptomyces venezuelae ATCC 10712, complete genomehypothetical protein3e-0962.4
NC_013517:825100:828669828669829412744Sebaldella termitidis ATCC 33386, complete genometranscriptional regulator, GntR family4e-0962
NC_015424:2510764:252788125278812528600720Aeromonas veronii B565 chromosome, complete genometranscriptional regulator of succinyl-CoA synthetase operon4e-0962
NC_021175:881845:909969909969910667699Streptococcus oligofermentans AS 1.3089, complete genomeGntR family transcriptional regulator4e-0962
NC_011899:1603500:1607699160769916088051107Halothermothrix orenii H 168, complete genomeregulatory protein GntR HTH5e-0961.6
NC_014815:658893:666593666593667015423Micromonospora sp. L5 chromosome, complete genome5e-0961.6
NC_013411:2767400:2789798278979827908921095Geobacillus sp. Y412MC61, complete genometranscriptional regulator, GntR family with LacI sensor4e-0961.6
NC_014915:1909275:1929734192973419308281095Geobacillus sp. Y412MC52 chromosome, complete genometranscriptional regulator, GntR family with LacI sensor4e-0961.6
NC_020210:1951746:1968428196842819695221095Geobacillus sp. GHH01, complete genomearabinose metabolism transcriptional repressor4e-0961.6
NC_006510:1921541:1944770194477019458641095Geobacillus kaustophilus HTA426, complete genomearabinose metabolism transcriptional repressor4e-0961.6
NC_016593:2015321:2015321201532120164151095Geobacillus thermoleovorans CCB_US3_UF5 chromosome, completearabinose metabolism transcriptional repressor4e-0961.6
NC_014206:1694330:1708771170877117098651095Geobacillus sp. C56-T3 chromosome, complete genomeGntR family transcriptional regulator4e-0961.6
NC_013595:702482:714904714904715620717Streptosporangium roseum DSM 43021, complete genomeputative transcriptional regulator, GntR family6e-0961.2
NC_007777:5087405:509495850949585095722765Frankia sp. CcI3, complete genometranscriptional regulator, GntR family7e-0960.8
NC_003888:4377000:438548643854864386217732Streptomyces coelicolor A3(2), complete genomeGntR-family transcriptional regulator1e-0860.1
NC_008390:2156188:215618821561882156958771Burkholderia cepacia AMMD chromosome 1, complete sequencetranscriptional regulator, GntR family1e-0860.1
NC_015656:381554:392794392794393570777Frankia symbiont of Datisca glomerata chromosome, complete genomeGntR family transcriptional regulator with UTRA sensor domain2e-0859.7
NC_016884:813000:8291908291908306471458Sulfobacillus acidophilus DSM 10332 chromosome, complete genomeGntR family transcriptional regulator2e-0859.7
NC_015757:2844599:2847618284761828491021485Sulfobacillus acidophilus TPY chromosome, complete genomeGntR family transcriptional regulator2e-0859.7
NC_015687:2632557:265543326554332656128696Clostridium acetobutylicum DSM 1731 chromosome, complete genomeFadR family transcriptional regulator2e-0859.3
NC_015957:1070500:107590210759021076678777Streptomyces violaceusniger Tu 4113 chromosome, complete genomeGntR family transcriptional regulator2e-0859.3
NC_017093:2357583:236657423665742367317744Actinoplanes missouriensis 431, complete genomeGntR family transcriptional regulator2e-0859.3
NC_011837:238160:267607267607268584978Clostridium kluyveri NBRC 12016, complete genomehypothetical protein3e-0858.9
NC_009706:238160:267607267607268584978Clostridium kluyveri DSM 555 chromosome, complete genometranscriptional regulator3e-0858.9
NC_016582:5393568:540514154051415405914774Streptomyces bingchenggensis BCW-1 chromosome, complete genomeGntR family transcriptional regulator3e-0858.9
NC_015978:412856:431333431333432055723Lactobacillus sanfranciscensis TMW 1.1304 chromosome, completehypothetical protein4e-0858.5
NC_003888:4613000:462376646237664624524759Streptomyces coelicolor A3(2), complete genomeGntR-family regulatory protein4e-0858.5
NC_021177:4124839:413046841304684131211744Streptomyces fulvissimus DSM 40593, complete genomeTranscriptional regulator, GntR family with UTRA sensor domain6e-0858.2
NC_014165:374674:384873384873385190318Thermobispora bispora DSM 43833 chromosome, complete genomeGntR family transcriptional regulator5e-0858.2
NC_011740:3739395:374508437450843745848765Escherichia fergusonii ATCC 35469, complete genomeputative GntR-family transcriptional regulator5e-0858.2
NC_013235:682902:696087696087696872786Nakamurella multipartita DSM 44233, complete genometranscriptional regulator, GntR family6e-0857.8
NC_016604:3137694:313854031385403139238699Mycobacterium rhodesiae NBB3 chromosome, complete genometranscriptional regulator8e-0857.4
NC_007644:1352794:135436113543611355110750Moorella thermoacetica ATCC 39073, complete genomeregulatory protein GntR, HTH8e-0857.4
NC_013729:2258582:227234522723452272686342Kribbella flavida DSM 17836, complete genometranscriptional regulator, GntR family9e-0857.4
NC_015942:63440:819408194082698759Acidithiobacillus ferrivorans SS3 chromosome, complete genomeGntR family transcriptional regulator with UTRA sensor domain1e-0757.4
NC_013595:151500:157111157111157848738Streptosporangium roseum DSM 43021, complete genomeputative transcriptional regulator, GntR family1e-0757.4
NC_012470:1061392:106354310635431064241699Streptococcus equi subsp. zooepidemicus, complete genomeGntR family regulatory protein1e-0757.4
NC_014328:4387303:442000144200014420978978Clostridium ljungdahlii ATCC 49587 chromosome, complete genomeputative regulatory protein1e-0757
NC_016114:3575955:358827135882713589014744Streptomyces flavogriseus ATCC 33331 chromosome, complete genomeGntR family transcriptional regulator1e-0757
NC_013131:9903320:992508499250849925812729Catenulispora acidiphila DSM 44928, complete genometranscriptional regulator, GntR family1e-0757
NC_016948:678939:688007688007688786780Mycobacterium intracellulare MOTT-64 chromosome, complete genometranscriptional regulator2e-0756.6
NC_014815:841484:883337883337883576240Micromonospora sp. L5 chromosome, complete genometranscriptional regulator, gntr family2e-0756.6
NC_013235:508585:524691524691525431741Nakamurella multipartita DSM 44233, complete genometranscriptional regulator, GntR family2e-0756.6
NC_014666:7152782:716610971661097166882774Frankia sp. EuI1c chromosome, complete genometranscriptional regulator, GntR family2e-0756.2
NC_019970:2263427:227858222785822279304723Thermoanaerobacterium thermosaccharolyticum M0795, complete genometranscriptional regulator2e-0756.2
NC_015555:1989463:200663720066372007359723Thermoanaerobacterium xylanolyticum LX-11 chromosome, completetranscriptional regulator, GntR family with UTRA sensor domain2e-0756.2
NC_013929:5927935:594000159400015940780780Streptomyces scabiei 87.22 chromosome, complete genomeGntR family transcriptional regulator3e-0755.8
NC_002952:494500:508595508595509323729Staphylococcus aureus subsp. aureus MRSA252, complete genomeGntR family regulatory protein3e-0755.8
NC_016947:666627:675648675648676442795Mycobacterium intracellulare MOTT-02 chromosome, complete genomeregulatory protein2e-0755.8
NC_009848:161373:170355170355170726372Bacillus pumilus SAFR-032, complete genomeGntR family transcriptional regulator4e-0755.5
NC_015567:2420169:242669124266912427395705Serratia sp. AS9 chromosome, complete genomeGntR family transcriptional regulator with UTRA sensor domain3e-0755.5
NC_015566:2420287:242680924268092427513705Serratia sp. AS12 chromosome, complete genomeGntR family transcriptional regulator with UTRA sensor domain3e-0755.5
NC_008261:421000:4252114252114267731563Clostridium perfringens ATCC 13124, complete genometranscriptional regulator, GntR family/aminotransferase3e-0755.5
NC_002758:511247:524944524944525672729Staphylococcus aureus subsp. aureus Mu50, complete genomesimilar to trehalose operon transcription repressor treR3e-0755.5
NC_002745:487500:500630500630501358729Staphylococcus aureus subsp. aureus N315, complete genomehypothetical protein3e-0755.5
NC_003923:473743:486009486009486737729Staphylococcus aureus subsp. aureus MW2, complete genomehypothetical protein3e-0755.5
NC_009487:522193:535890535890536618729Staphylococcus aureus subsp. aureus JH9 chromosome, completeGntR family transcriptional regulator3e-0755.5
NC_009632:522264:535961535961536689729Staphylococcus aureus subsp. aureus JH1 chromosome, completetrehalose operon repressor3e-0755.5
NC_013450:448054:461751461751462479729Staphylococcus aureus subsp. aureus ED98, complete genomeGntR family transcriptional regulator3e-0755.5
NC_014306:2518996:252033425203342521041708Erwinia billingiae Eb661, complete genomeTranscriptional regulator, GntR family5e-0755.1
NC_003888:3602753:360891636089163609695780Streptomyces coelicolor A3(2), complete genomekorSA, regulatory protein5e-0755.1
NC_018515:3169973:318893631889363189691756Desulfosporosinus meridiei DSM 13257 chromosome, complete genometranscriptional regulator5e-0755.1
NC_018750:3249756:325719232571923257971780Streptomyces venezuelae ATCC 10712, complete genomeGntR-family transcriptional regulator5e-0755.1
NC_008278:1845000:185660018566001857508909Frankia alni ACN14a, complete genomePutative transcriptional regulator (GntR-family)5e-0755.1
NC_017098:1542284:1587184158718415884251242Spirochaeta africana DSM 8902 chromosome, complete genometranscriptional regulator5e-0755.1
NC_017337:498688:512387512387513115729Staphylococcus aureus subsp. aureus ED133 chromosome, completetrehalose operon repressor4e-0755.1
NC_006510:2044347:206127920612792062007729Geobacillus kaustophilus HTA426, complete genometranscriptional regulator4e-0755.1
NC_013517:4117666:411846741184674119201735Sebaldella termitidis ATCC 33386, complete genometranscriptional regulator, GntR family4e-0755.1
NC_008262:419726:4197264197264212851560Clostridium perfringens SM101, complete genometranscriptional regulator, GntR family/aminotransferase4e-0755.1
NC_015656:1469501:148617614861761486967792Frankia symbiont of Datisca glomerata chromosome, complete genomeGntR family transcriptional regulator with UTRA sensor domain6e-0754.7
NC_014363:1605349:161115216111521611877726Olsenella uli DSM 7084 chromosome, complete genometranscriptional regulator, GntR family6e-0754.7
NC_010572:3925803:393580339358033936576774Streptomyces griseus subsp. griseus NBRC 13350, complete genomeputative GntR-family transcriptional regulator6e-0754.7
NC_011274:1544653:157101315710131571732720Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91GntR family regulatory protein6e-0754.7
NC_003888:6103534:613628961362896137068780Streptomyces coelicolor A3(2), complete genometranscriptional regulator5e-0754.7
NC_007519:1244198:125890712589071259602696Desulfovibrio alaskensis G20 chromosome, complete genomeGntR family transcriptional regulator7e-0754.3
NC_013510:5499447:552018155201815520483303Thermomonospora curvata DSM 43183, complete genometranscriptional regulator, GntR family7e-0754.3
NC_014118:1528851:152885115288511529540690Burkholderia sp. CCGE1002 chromosome chromosome 2, completeregulatory protein GntR HTH7e-0754.3
NC_015957:7533000:754612175461217546888768Streptomyces violaceusniger Tu 4113 chromosome, complete genomeGntR family transcriptional regulator with UTRA sensor domain8e-0754.3
NC_013595:9547254:956468295646829565155474Streptosporangium roseum DSM 43021, complete genomeputative transcriptional regulator, GntR family1e-0653.9
NC_015949:47414:482944829448677384Caldicellulosiruptor lactoaceticus 6A chromosome, complete genomeGntR family transcriptional regulator1e-0653.9
NC_004193:375416:394239394239394949711Oceanobacillus iheyensis HTE831, complete genometranscriptional regulator1e-0653.9
NC_020410:3868573:3879312387931238807601449Bacillus amyloliquefaciens subsp. plantarum UCMB5036 completeputative PLP-dependent transcriptional regulator9e-0753.9
NC_019842:3921424:3933781393378139352051425Bacillus amyloliquefaciens subsp. plantarum AS43.3 chromosome,HTH-type transcriptional regulator9e-0753.9
NC_020272:20435:2946629466309141449Bacillus amyloliquefaciens IT-45, complete genomeCrp/Fnr family transcriptional regulator9e-0753.9
NC_015389:1977736:198394319839431984632690Coriobacterium glomerans PW2 chromosome, complete genometranscriptional regulator, GntR family1e-0653.5
NC_003888:4314389:432757643275764328355780Streptomyces coelicolor A3(2), complete genomegntR-family transcriptional regulator1e-0653.5
NC_013929:5248000:526121052612105261998789Streptomyces scabiei 87.22 chromosome, complete genometranscriptional regulator1e-0653.5
NC_006905:3717306:373309237330923733811720Salmonella enterica subsp. enterica serovar Choleraesuis strputative regulatory protein, gntR family1e-0653.5
NC_003155:4906639:491297149129714913759789Streptomyces avermitilis MA-4680, complete genomeregulatory protein KorSA, GntR-family transcriptional regulator1e-0653.5
NC_020211:2206500:222411922241192224883765Serratia marcescens WW4, complete genomeputative DNA-binding transcriptional regulator1e-0653.5
NC_002976:1540794:154170815417081542085378Staphylococcus epidermidis RP62A, complete genometranscriptional regulator, GntR family1e-0653.5
NC_003155:4592000:462092046209204621708789Streptomyces avermitilis MA-4680, complete genomeregulatory protein KorSA, GntR-family transcriptional regulator1e-0653.5
NC_004557:2711702:272619827261982727172975Clostridium tetani E88, complete genometranscriptional regulator, putative regular for glutamate degradation1e-0653.5
NC_003366:461602:4684394684394700011563Clostridium perfringens str. 13, complete genomeprobable transcription regulator2e-0653.1
NC_003888:3602753:361362836136283614359732Streptomyces coelicolor A3(2), complete genomegntR-family regulator2e-0653.1
NC_014210:144036:153050153050153823774Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,transcriptional regulator, GntR family2e-0653.1
NC_016023:755237:755237755237755947711Bacillus coagulans 36D1 chromosome, complete genomeGntR domain-containing protein2e-0653.1
NC_016113:803268:812013812013812744732Streptomyces cattleya NRRL 8057 plasmid pSCAT, complete sequenceProtein korA2e-0653.1
NC_014829:3964616:398018939801893980911723Bacillus cellulosilyticus DSM 2522 chromosome, complete genometranscriptional regulator, GntR family2e-0653.1
NC_017195:3919000:392472639247263925436711Bacillus subtilis subsp. subtilis str. RO-NN-1 chromosome, completetranscriptional regulator, GntR family2e-0652.8
NC_016582:7101701:711106371110637111593531Streptomyces bingchenggensis BCW-1 chromosome, complete genomeGntR family transcriptional regulator protein2e-0652.8
NC_017200:3622838:364600236460023646727726Bacillus thuringiensis serovar finitimus YBT-020 chromosome,GntR family transcriptional regulator2e-0652.8
NC_009953:1364500:137456313745631375276714Salinispora arenicola CNS-205 chromosome, complete genomeGntR family transcriptional regulator2e-0652.8
NC_010676:304405:323839323839324528690Burkholderia phytofirmans PsJN chromosome 2, complete sequenceGntR domain protein2e-0652.8
NC_018750:2118907:212975521297552130531777Streptomyces venezuelae ATCC 10712, complete genomeADP-ribose pyrophosphatase3e-0652.4
NC_017188:3900951:3907675390767539091231449Bacillus amyloliquefaciens TA208 chromosome, complete genomeputative PLP-dependent transcriptional regulator3e-0652.4
NC_017191:3901914:3909367390936739108151449Bacillus amyloliquefaciens XH7 chromosome, complete genomePLP-dependent transcriptional3e-0652.4
UCMB5137:2128500:214259721425972142974378Bacillus atrophaeus UCMB-5137GntR family transcriptional regulator3e-0652.4
NC_012658:545840:5538595538595553101452Clostridium botulinum Ba4 str. 657 chromosome, complete genomeGntR family transcriptional regulator3e-0652.4
NC_016816:2073677:208895120889512089655705Pantoea ananatis LMG 5342, complete genomeGntR family transcriptional regulator3e-0652.4
NC_015376:2061990:208370120837012084468768Burkholderia gladioli BSR3 chromosome chromosome 2, completeTranscriptional regulator3e-0652.4
NC_015957:5082172:508617150861715086989819Streptomyces violaceusniger Tu 4113 chromosome, complete genomeGntR family transcriptional regulator with UTRA sensor domain4e-0652
NC_016626:1825845:1851434185143418528551422Burkholderia sp. YI23 plasmid byi_1p, complete sequenceGntR family transcriptional regulator4e-0652
NC_014815:658893:664402664402665223822Micromonospora sp. L5 chromosome, complete genometranscriptional regulator, gntr family4e-0652
NC_007644:1352794:135596513559651356696732Moorella thermoacetica ATCC 39073, complete genometranscriptional regulator, GntR family4e-0652
NC_014210:5683616:570066057006605701403744Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,transcriptional regulator, GntR family4e-0652
NC_017338:470993:484040484040484768729Staphylococcus aureus subsp. aureus JKD6159 chromosome, completetrehalose operon transcription repressor4e-0652
NC_006322:1994000:1999578199957820007441167Bacillus licheniformis ATCC 14580, complete genomeAraR3e-0652
CP002207:2169277:217930621793062179683378Bacillus atrophaeus 1942, complete genomeGntR family transcriptional regulator5e-0651.6
NC_014639:2169277:217930621793062179683378Bacillus atrophaeus 1942 chromosome, complete genomeGntR family transcriptional regulator5e-0651.6
NC_008321:458811:474586474586475338753Shewanella sp. MR-4, complete genomeregulatory protein GntR, HTH5e-0651.6
NC_000964:4116104:412221741222174122927711Bacillus subtilis subsp. subtilis str. 168, complete genomehypothetical protein6e-0651.2
NC_013939:913890:932884932884933630747Deferribacter desulfuricans SSM1, complete genomehistidine utilization repressor6e-0651.2
NC_014211:439611:450791450791451522732Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 plasmidtranscriptional regulator, GntR family7e-0651.2
NC_020244:3961337:396499839649983965708711Bacillus subtilis XF-1, complete genomeputative HTH-type transcriptional regulator7e-0650.8
NC_018665:1:1721317213186071395Exiguobacterium antarcticum B7 chromosome, complete genomeTranscriptional regulator, GntR family8e-0650.8
NC_014639:3584000:3600028360002836014101383Bacillus atrophaeus 1942 chromosome, complete genomeGntR family transcriptional regulator9e-0650.8
CP002207:3584000:3600028360002836014101383Bacillus atrophaeus 1942, complete genomeGntR family transcriptional regulator9e-0650.8