Pre_GI: BLASTP Hits

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Query: NC_013198:394000:418467 Lactobacillus rhamnosus GG, complete genome

Start: 418467, End: 420155, Length: 1689

Host Lineage: Lactobacillus rhamnosus; Lactobacillus; Lactobacillaceae; Lactobacillales; Firmicutes; Bacteria

General Information: They are commonly found in the oral, vaginal, and intestinal regions of many animals. They are important industrial microbes that contribute to the production of cheese, yogurt, and other products such as fermented milks, all stemming from the production of lactic acid, which inhibits the growth of other organisms as well as lowering the pH of the food product. Industrial production requires the use of starter cultures, which are carefully cultivated, created, and maintained, which produce specific end products during fermentation that impart flavor to the final product, as well as contributing important metabolic reactions, such as the breakdown of milk proteins during cheese production. The end product of fermentation, lactic acid, is also being used as a starter molecule for complex organic molecule syntheses. Lactobacillus rhamnosus is used in the manufacture of cheese and other dairy products to aid ripening and enhance flavors. This organism has also been shown to stimulate the immune system and have antibacterial activity against intestinal pathogens, indicating that it may be useful as a probiotic.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008526:343445:3656743656743672721599Lactobacillus casei ATCC 334, complete genomeMannose-specific PTS system component IICD0981
NC_014334:2696000:2706521270652127082151695Lactobacillus casei str. Zhang chromosome, complete genomePTS system mannose-specific transporter subunit IICD0641
NC_011149:4474012:449142044914204492292873Salmonella enterica subsp. enterica serovar Agona str. SL483,fructose permease iid component5e-62239
NC_011149:4474012:449065744906574491406750Salmonella enterica subsp. enterica serovar Agona str. SL483,2e-57223
NC_009089:581655:583393583393584232840Clostridium difficile 630, complete genomePTS system, IId component4e-48192
NC_012880:2399205:240318524031852404024840Dickeya dadantii Ech703, complete genomePTS system, mannose/fructose/sorbose family, IID subunit2e-45184
NC_016023:875416:883779883779884585807Bacillus coagulans 36D1 chromosome, complete genomePTS system mannose/fructose/sorbose family transporter subunit IID8e-45182
NC_015061:3147691:314955331495533150395843Rahnella sp. Y9602 chromosome, complete genomePTS system, mannose/fructose/sorbose family, IID subunit7e-45182
NC_017047:3212000:321415532141553214997843Rahnella aquatilis HX2 chromosome, complete genomePTS system mannose-specific transporter subunit IID7e-45182
NC_016818:3148000:315008931500893150931843Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completePTS system mannose/fructose/sorbose family transporter subunit IID5e-45182
NC_017328:3289853:3311322331132233127791458Shigella flexneri 2002017 chromosome, complete genomePTS system N-acetylgalactosamine-specific transporter subunit IID2e-42174
NC_013199:392450:412726412726413574849Lactobacillus rhamnosus Lc 705, complete genomePTS system, mannose/fructose/sorbose IID component2e-39164
NC_011294:4604283:462884346288434629679837Salmonella enterica subsp. enterica serovar Enteritidis strPTS system transporter subunit D5e-39162
NC_014106:419511:452561452561453481921Lactobacillus crispatus ST1, complete genomePTS system, mannose-specific IID component2e-38160
NC_009617:4436837:445046144504614451282822Clostridium beijerinckii NCIMB 8052 chromosome, complete genomePTS system mannose/fructose/sorbose family transporter subunit IID6e-38159
NC_018528:1681060:168733116873311688251921Lactobacillus helveticus R0052 chromosome, complete genomePTS system mannose family transporter subunit IID2e-37157
NC_015519:270637:287720287720288547828Tepidanaerobacter sp. Re1 chromosome, complete genomePTS system mannose/fructose/sorbose family transporter subunit IID3e-37157
NC_004631:3841975:386377538637753864632858Salmonella enterica subsp. enterica serovar Typhi Ty2, completeputative PTS system protein4e-37156
NC_003198:3855157:387828538782853879142858Salmonella enterica subsp. enterica serovar Typhi str. CT18,putative PTS system protein4e-37156
NC_015602:1339067:134426113442611345181921Lactobacillus kefiranofaciens ZW3 chromosome, complete genomePTS system, mannose-specific IID component2e-36154
NC_014724:439594:477107477107478027921Lactobacillus amylovorus GRL 1112 chromosome, complete genomePTS system, mannose-specific IID component2e-36154
NC_015214:437733:476722476722477642921Lactobacillus acidophilus 30SC chromosome, complete genomePTS system, mannose-specific IID component2e-36154
NC_005126:949226:968992968992969885894Photorhabdus luminescens subsp. laumondii TTO1, complete genomePTS system, N-acetylgalactosamine-specific IID component (EIID-AGA) (N-acetylgalactosamine-permease IID component) (Phosphotransferase enzyme II, D co2e-36154
NC_013192:2434664:245197524519752452808834Leptotrichia buccalis DSM 1135, complete genomePTS system, mannose/fructose/sorbose family, IID subunit3e-36153
NC_009792:4693152:470986447098644710724861Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein5e-36152
NC_006814:403723:441344441344442282939Lactobacillus acidophilus NCFM, complete genomemannose-specific PTS system component IID1e-35151
NC_010723:1379256:139967813996781400622945Clostridium botulinum E3 str. Alaska E43, complete genomePTS system, mannose/fructose/sorbose family, IID component7e-35149
NC_015975:1936504:195040519504051951319915Lactobacillus ruminis ATCC 27782 chromosome, complete genomePTS family mannose/fructose/sorbose porter component IID7e-35149
NC_008530:1775841:178007817800781781007930Lactobacillus gasseri ATCC 33323, complete genomemannose-specific PTS system component IID1e-34148
NC_013504:1648551:165526816552681656197930Lactobacillus johnsonii FI9785 chromosome, complete genomephosphoenolpyruvate-dependent sugar phosphotransferase system EIID, probably mannose specific1e-34148
NC_005362:1870620:187627718762771877206930Lactobacillus johnsonii NCC 533, complete genomephosphoenolpyruvate-dependent sugar phosphotransferase system EIID probable mannose specific1e-34148
NC_016023:875416:884578884578885378801Bacillus coagulans 36D1 chromosome, complete genomePTS system sorbose-specific transporter subunit IIC4e-34146
NC_012962:869295:883460883460884302843Photorhabdus asymbiotica, complete genomepts system, n-acetylgalactosamine-specific iid component (eiid-aga (n-acetylgalactosamine-permease iid component) (phosphotransferas enzyme ii, d comp5e-34146
NC_016612:2902628:292990929299092930757849Klebsiella oxytoca KCTC 1686 chromosome, complete genomePTS system mannose/fructose/sorbose family transporter subunit IID2e-33144
NC_011742:3799788:381094738109473811873927Escherichia coli S88 chromosome, complete genomephosphotransferase system enzyme IID1e-33144
NC_014377:1897857:190925419092541910114861Thermosediminibacter oceani DSM 16646 chromosome, complete genomePTS system IID component, Man family (TC 4.A.6)1e-33144
NC_008563:3888232:389622338962233897125903Escherichia coli APEC O1, complete genomehypothetical protein1e-33144
NC_013192:469771:483533483533484450918Leptotrichia buccalis DSM 1135, complete genomePTS system, mannose/fructose/sorbose family, IID subunit5e-33142
NC_008261:967973:970981970981971892912Clostridium perfringens ATCC 13124, complete genomePTS system, mannose/fructose/sorbose family, IID component8e-33142
NC_013171:228356:228356228356229294939Anaerococcus prevotii DSM 20548, complete genomePTS system mannose/fructose/sorbose family IID component3e-32140
NC_015519:270637:288540288540289301762Tepidanaerobacter sp. Re1 chromosome, complete genomephosphotransferase system PTS sorbose-specific IIC subunit3e-31137
NC_003198:3855157:387753638775363878285750Salmonella enterica subsp. enterica serovar Typhi str. CT18,putative PTS system protein2e-31137
NC_004631:3841975:386302638630263863775750Salmonella enterica subsp. enterica serovar Typhi Ty2, completeputative PTS system protein2e-31137
NC_009792:4693152:471072147107214711470750Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein6e-31135
NC_011660:2509362:251640625164062517317912Listeria monocytogenes HCC23 chromosome, complete genomePTS system fructose-specific transporter subunit IID2e-30134
CP002185:3475991:349917434991743500052879Escherichia coli W, complete genomeN-acetylgalactosamine-specific IID component9e-30132
NC_020063:4653422:466878846687884669588801Enterobacteriaceae bacterium strain FGI 57, complete genomephosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC1e-29132
NC_012967:3191319:321439832143983215276879Escherichia coli B str. REL606 chromosome, complete genomePTS system, N-acetylgalactosamine-specific IID component1e-29132
NC_015389:1977736:200684920068492007703855Coriobacterium glomerans PW2 chromosome, complete genomePTS system IID component, Man family2e-29131
NC_004337:3249791:327202832720283272837810Shigella flexneri 2a str. 301, complete genomeputative transport enzyme subunit3e-29130
NC_009442:1158268:116443711644371165252816Streptococcus suis 05ZYH33 chromosome, complete genomephosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID5e-29129
NC_016023:1769925:178811317881131788934822Bacillus coagulans 36D1 chromosome, complete genomePTS system mannose/fructose/sorbose family transporter subunit IID1e-27124
NC_014376:4369666:437043543704354371226792Clostridium saccharolyticum WM1 chromosome, complete genomePTS system mannose/fructose/sorbose family IID component3e-27123
NC_011134:1222739:122454512245451225333789Streptococcus equi subsp. zooepidemicus str. MGCS10565, completemannose permease IID component ManZ9e-27122
NC_009089:581655:582611582611583369759Clostridium difficile 630, complete genomePTS system, IIc component8e-27122
NC_007946:3855445:386274538627453863491747Escherichia coli UTI89, complete genomeputative phosphotransferase system protein7e-27122
NC_008563:3888232:389553238955323896278747Escherichia coli APEC O1, complete genomehypothetical protein7e-27122
NC_011742:3799788:381028038102803811026747Escherichia coli S88 chromosome, complete genomephosphotransferase system enzyme IIC7e-27122
NC_010067:1116148:112641511264151127305891Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein7e-26119
NC_007946:3855445:386362838636283864338711Escherichia coli UTI89, complete genomeputative phosphotransferase system protein7e-26119
NC_015389:809474:817609817609818496888Coriobacterium glomerans PW2 chromosome, complete genomePTS system IID component, Man family1e-25118
NC_020063:4653422:466958146695814670423843Enterobacteriaceae bacterium strain FGI 57, complete genomephosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID2e-25117
NC_012962:869295:882634882634883419786Photorhabdus asymbiotica, complete genomepts system, n-acetylgalactosamine-specific iic component 1 (eiic-aga (n-acetylgalactosamine-permease iic component 1)2e-25117
NC_005139:518760:527148527148528032885Vibrio vulnificus YJ016 chromosome I, complete sequencephosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID5e-25116
NC_015424:2357600:237913023791302379915786Aeromonas veronii B565 chromosome, complete genomePTS system, IIC component5e-24112
NC_010067:1116148:112565511256551126425771Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein5e-24112
NC_005139:518760:526385526385527158774Vibrio vulnificus YJ016 chromosome I, complete sequencephosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC1e-22108
NC_010380:124655:147184147184147999816Streptococcus pneumoniae Hungary19A-6, complete genomePTS system, IID component2e-22107
NC_015424:2357600:237836123783612379137777Aeromonas veronii B565 chromosome, complete genomePTS system, IID component7e-22105
NC_014377:1897857:191013919101391910918780Thermosediminibacter oceani DSM 16646 chromosome, complete genomephosphotransferase system PTS sorbose-specific IIC subunit1e-20102
NC_011294:4604283:462807446280744628853780Salmonella enterica subsp. enterica serovar Enteritidis strPTS system transporter subunit C1e-20101
NC_010723:1379256:139888813988881399691804Clostridium botulinum E3 str. Alaska E43, complete genomePTS system sorbose-specific iic component2e-20101
NC_011134:1222739:122536912253691226178810Streptococcus equi subsp. zooepidemicus str. MGCS10565, completemannose permease IIC component ManY5e-2099.8
NC_012967:3191319:321362932136293214408780Escherichia coli B str. REL606 chromosome, complete genomeN-acetylgalactosamine-specific PTS system transporter subunit IIC5e-2099.8
CP002185:3475991:349840534984053499184780Escherichia coli W, complete genomeN-acetylgalactosamine-specific IIC component5e-2099.8
NC_004337:3249791:327125932712593272038780Shigella flexneri 2a str. 301, complete genomeN-acetylgalactosameine-specific IIC component 27e-2099.4
NC_015389:1977736:200605120060512006845795Coriobacterium glomerans PW2 chromosome, complete genomephosphotransferase system PTS sorbose-specific IIC subunit5e-1893.2
NC_015389:1782825:179819117981911799054864Coriobacterium glomerans PW2 chromosome, complete genomePTS system IID component, Man family8e-1892.4
NC_013199:392450:411874411874412707834Lactobacillus rhamnosus Lc 705, complete genomePTS system, mannose-specific IIC component (ManY)2e-1791.3
NC_011660:2509362:251733925173392518145807Listeria monocytogenes HCC23 chromosome, complete genomePTS system fructose-specific transporter subunit IIC1e-1688.6
NC_015389:809474:816754816754817578825Coriobacterium glomerans PW2 chromosome, complete genomephosphotransferase system PTS sorbose-specific IIC subunit3e-1687
NC_014376:4369666:436966643696664370448783Clostridium saccharolyticum WM1 chromosome, complete genomephosphotransferase system PTS sorbose-specific IIC subunit1e-1585.5
NC_015425:841754:855681855681856496816Clostridium botulinum BKT015925 chromosome, complete genomePTS system mannose/fructose/sorbose family transporter subunit IIC3e-1584
NC_016023:1769925:178731617873161788116801Bacillus coagulans 36D1 chromosome, complete genomePTS system sorbose-specific transporter subunit IIC4e-1583.6
NC_008261:967973:970158970158970961804Clostridium perfringens ATCC 13124, complete genomePTS system, mannose/fructose/sorbose family, IIC component9e-1582.4
NC_017047:3212000:321334632133463214143798Rahnella aquatilis HX2 chromosome, complete genomePTS system mannose-specific transporter subunit IIC1e-1481.6
NC_016818:3148000:314928031492803150077798Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completePTS system mannose/fructose/sorbose family transporter subunit IIC1e-1481.6
NC_015061:3147691:314874431487443149541798Rahnella sp. Y9602 chromosome, complete genomePTS system, mannose/fructose/sorbose family, IIC subunit1e-1481.6
NC_009442:1158268:116523911652391166015777Streptococcus suis 05ZYH33 chromosome, complete genomephosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC2e-1481.3
NC_015975:1936504:195133419513341952143810Lactobacillus ruminis ATCC 27782 chromosome, complete genomePTS family mannose/fructose/sorbose porter component IIC2e-1480.9
NC_012880:2399205:240237424023742403171798Dickeya dadantii Ech703, complete genomePTS system, mannose/fructose/sorbose family, IIC subunit3e-1377
NC_006814:403723:440509440509441330822Lactobacillus acidophilus NCFM, complete genomemannose-specific PTS system component IIC3e-1377
NC_018528:1681060:168828016882801689092813Lactobacillus helveticus R0052 chromosome, complete genomePTS system mannose-specific transporter subunit IIC4e-1377
NC_014106:419511:451723451723452532810Lactobacillus crispatus ST1, complete genomePTS system, mannose-specific IIC component8e-1375.9
NC_013192:2434664:245282124528212453636816Leptotrichia buccalis DSM 1135, complete genomePTS system, mannose/fructose/sorbose family, IIC subunit1e-1275.5
NC_014724:439594:476266476266477078813Lactobacillus amylovorus GRL 1112 chromosome, complete genomemannose-specific PTS system component IIC5e-1273.2
NC_015214:437733:475881475881476693813Lactobacillus acidophilus 30SC chromosome, complete genomePTS system mannose-specific transporter subunit IIC5e-1273.2
NC_015389:1782825:179732317973231798201879Coriobacterium glomerans PW2 chromosome, complete genomephosphotransferase system PTS sorbose-specific IIC subunit4e-1273.2
NC_015425:841754:854861854861855679819Clostridium botulinum BKT015925 chromosome, complete genomePTS system mannose/fructose/sorbose family transporter subunit IIC6e-1272.8
NC_008530:1775841:178103617810361781839804Lactobacillus gasseri ATCC 33323, complete genomemannose-specific PTS system component IIC2e-1171.6
NC_010380:124655:146292146292147197906Streptococcus pneumoniae Hungary19A-6, complete genomephosphotransferase system sugar-specific eiic component2e-1171.2
NC_005362:1870620:187723618772361878039804Lactobacillus johnsonii NCC 533, complete genomephosphoenolpyruvate-dependent sugar phosphotransferase system EIIC, probable mannose specific2e-1171.2
NC_015602:1339067:134521013452101346019810Lactobacillus kefiranofaciens ZW3 chromosome, complete genomePTS system, mannose-specific IIC component2e-1171.2
NC_009617:4436837:445130444513044452095792Clostridium beijerinckii NCIMB 8052 chromosome, complete genomePTS system mannose/fructose/sorbose family transporter subunit IIC2e-1171.2
NC_013504:1648551:165622716562271657030804Lactobacillus johnsonii FI9785 chromosome, complete genomephosphoenolpyruvate-dependent sugar phosphotransferase system EIIC, probably mannose specific4e-1170.5
NC_013192:469771:484469484469485275807Leptotrichia buccalis DSM 1135, complete genomephosphotransferase system PTS sorbose-specific IIC subunit3e-1067.4
NC_016612:2902628:292909729290972929897801Klebsiella oxytoca KCTC 1686 chromosome, complete genomePTS system mannose-specific transporter subunit IIC3e-0757.4
NC_010473:3354052:337646833764683376869402Escherichia coli str. K-12 substr. DH10B, complete genome5e-0756.6
AC_000091:3258377:328055632805563280957402Escherichia coli W3110 DNA, complete genome5e-0756.6