Pre_GI: BLASTP Hits

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Query: NC_009012:2953638:2959377 Clostridium thermocellum ATCC 27405, complete genome

Start: 2959377, End: 2960036, Length: 660

Host Lineage: Clostridium thermocellum; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: This strain is a well studied producer of endoglucanase and several restriction endonucleases. Thermophilic cellulose degrading bacterium. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This organism is a thermophilic anaerobe that produces an extracellular enzyme system capable of degrading crystalline cellulose to soluble sugars that are further utilized as the carbon source for growth.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_020134:420500:445303445303446001699Clostridium stercorarium subsp. stercorarium DSM 8532, completepeptidoglycan-binding lysin domain-containing protein2e-84311
NC_014376:1472304:150433215043321504994663Clostridium saccharolyticum WM1 chromosome, complete genomePeptidoglycan-binding lysin domain protein4e-49194
NC_017297:2531750:253784125378412538518678Clostridium botulinum F str. 230613 chromosome, complete genomelysM domain protein1e-24112
NC_010723:915697:926873926873927535663Clostridium botulinum E3 str. Alaska E43, complete genomepeptidoglycan-binding LysM6e-24110
NC_013216:4404085:441613744161374416790654Desulfotomaculum acetoxidans DSM 771, complete genomePeptidoglycan-binding LysM4e-2098.2
NC_013315:1707293:171639617163961717085690Clostridium difficile CD196 chromosome, complete genomephage cell wall hydrolase6e-1890.9
NC_020291:795500:851136851136851813678Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomeLysM domain-containing protein9e-1890.5
NC_009495:2479465:248513624851362485789654Clostridium botulinum A str. ATCC 3502 chromosome, complete genomehypothetical protein5e-1787.8
NC_014652:801653:825871825871826527657Caldicellulosiruptor hydrothermalis 108 chromosome, completepeptidoglycan-binding lysin domain protein1e-1686.7
NC_009633:2592000:259999325999932600643651Alkaliphilus metalliredigens QYMF chromosome, complete genomepeptidoglycan-binding protein LysM3e-1685.1
NC_013406:6052913:605565560556556056374720Paenibacillus sp. Y412MC10 chromosome, complete genomepeptidoglycan-binding lysin domain-containing protein1e-1583.2
NC_012563:2566500:257315425731542573843690Clostridium botulinum A2 str. Kyoto, complete genomehypothetical protein1e-1582.8
NC_017195:1308730:131587613158761316487612Bacillus subtilis subsp. subtilis str. RO-NN-1 chromosome, completeLysM domain protein9e-1580.5
NC_020244:1335531:134209013420901342749660Bacillus subtilis XF-1, complete genomehypothetical protein1e-1480.1
NC_014976:3546884:355283535528353553494660Bacillus subtilis BSn5 chromosome, complete genomeputative PBSX prophage murein binding protein1e-1479.7
NC_000964:1330000:133822213382221338929708Bacillus subtilis subsp. subtilis str. 168, complete genomehypothetical protein1e-1479.7
NC_016047:261304:266639266639267298660Bacillus subtilis subsp. spizizenii TU-B-10 chromosome, completeLysM domain-containing protein7e-1477.4
NC_014483:1179286:118924511892451189889645Paenibacillus polymyxa E681 chromosome, complete genomePhage-like element PBSX protein xkdP7e-1477.4
NC_000964:2670288:267128126712812671940660Bacillus subtilis subsp. subtilis str. 168, complete genomehypothetical protein1e-1376.6
NC_014976:627935:656870656870657529660Bacillus subtilis BSn5 chromosome, complete genomehypothetical protein1e-1376.6
NC_016641:2950000:295805629580562958697642Paenibacillus terrae HPL-003 chromosome, complete genomepeptidoglycan-binding lysin2e-1376.3
NC_011830:1504497:152165615216561522327672Desulfitobacterium hafniense DCB-2, complete genomePeptidoglycan-binding LysM2e-1375.9
NC_018515:3411276:342770634277063428368663Desulfosporosinus meridiei DSM 13257 chromosome, complete genomeLysM domain-containing protein2e-1375.5
UCMB5137:861734:875509875509876168660Bacillus atrophaeus UCMB-5137hypothetical protein6e-1374.3
NC_013406:6052913:606795160679516068595645Paenibacillus sp. Y412MC10 chromosome, complete genomepeptidoglycan-binding lysin domain-containing protein7e-1373.9
NC_016048:2563222:258043225804322581085654Oscillibacter valericigenes Sjm18-20, complete genomehypothetical protein1e-1273.6
NC_014479:1291500:129713212971321297791660Bacillus subtilis subsp. spizizenii str. W23 chromosome, completeputative murein binding protein; PBSZ phage1e-1273.2
NC_016047:1435961:144521114452111445870660Bacillus subtilis subsp. spizizenii TU-B-10 chromosome, completeLysM domain-containing protein2e-1272.8
NC_012673:1:328603286033543684Exiguobacterium sp. AT1b, complete genomePeptidoglycan-binding LysM2e-1066.2
NC_009848:2755874:276134227613422762010669Bacillus pumilus SAFR-032, complete genomehypothetical protein3e-1065.1
NC_019896:2719456:273037327303732731065693Bacillus subtilis subsp. subtilis str. BSP1 chromosome, completePhage-like element PBSX protein XkdP5e-1064.7
NC_012759:2633949:268017126801712680620450Escherichia coli BW2952 chromosome, complete genomeLysM domain/BON superfamily protein8e-1063.9
NC_011742:2863316:288353428835342883983450Escherichia coli S88 chromosome, complete genomeLysM domain/BON superfamily protein8e-1063.9
NC_011601:2998326:302220030222003022649450Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomeLysM domain/BON superfamily protein8e-1063.9
NC_010473:2839902:288612428861242886573450Escherichia coli str. K-12 substr. DH10B, complete genomehypothetical protein8e-1063.9
NC_008563:2946391:296622329662232966672450Escherichia coli APEC O1, complete genomehypothetical protein8e-1063.9
NC_000913:2746886:279435927943592794808450Escherichia coli K12, complete genomehypothetical protein8e-1063.9
AC_000091:2747520:279499327949932795442450Escherichia coli W3110 DNA, complete genomehypothetical protein8e-1063.9
CP002185:2919752:294245229424522942901450Escherichia coli W, complete genomepredicted protein8e-1063.9
NC_010498:2847359:286995228699522870401450Escherichia coli SMS-3-5, complete genomephospholipid-binding protein9e-1063.9
NC_004337:2747917:276889627688962769345450Shigella flexneri 2a str. 301, complete genomehypothetical protein7e-1063.9
CU928160:2818750:284124628412462841695450Escherichia coli IAI1 chromosome, complete genomeconserved hypothetical protein7e-1063.9
AP010958:3238742:325886232588623259311450Escherichia coli O103:H2 str. 12009 DNA, complete genomeconserved predicted protein7e-1063.9
NC_017328:2785309:280777828077782808227450Shigella flexneri 2002017 chromosome, complete genomephospholipid-binding protein7e-1063.9
NC_016822:3065426:308816630881663088615450Shigella sonnei 53G, complete genomeLysM domain/BON superfamily protein7e-1063.9
NC_013364:3339768:335995133599513360400450Escherichia coli O111:H- str. 11128, complete genomehypothetical protein7e-1063.9
NC_013361:3651150:367477736747773675226450Escherichia coli O26:H11 str. 11368 chromosome, complete genomeLysM domain/BON superfamily protein7e-1063.9
NC_013353:3238742:325886232588623259311450Escherichia coli O103:H2 str. 12009, complete genomehypothetical protein7e-1063.9
NC_012967:2669182:269109026910902691539450Escherichia coli B str. REL606 chromosome, complete genomeLysM domain/BON superfamily protein7e-1063.9
NC_011741:2818750:284124628412462841695450Escherichia coli IAI1 chromosome, complete genomeLysM domain/BON superfamily protein7e-1063.9
NC_007384:2933625:295600229560022956451450Shigella sonnei Ss046, complete genomehypothetical protein7e-1063.9
NC_004741:2741971:276353227635322763981450Shigella flexneri 2a str. 2457T, complete genomehypothetical protein7e-1063.9
NC_014364:815346:8347888347888371842397Spirochaeta smaragdinae DSM 11293 chromosome, complete genomePeptidoglycan-binding lysin domain protein1e-0963.2
NC_011750:2928990:296387329638732964322450Escherichia coli IAI39 chromosome, complete genomeLysM domain/BON superfamily protein2e-0962.8
NC_017243:2383577:2400654240065424020631410Brachyspira intermedia PWS/A chromosome, complete genomeouter membrane protein (tmpB)2e-0962.4
NC_010001:3614314:362179536217953622733939Clostridium phytofermentans ISDg, complete genomePeptidoglycan-binding LysM4e-0961.6
NC_020064:2779864:279141727914172791863447Serratia marcescens FGI94, complete genomeputative phospholipid-binding protein,LysM domain-containing protein4e-0961.2
NC_012225:1213421:1231562123156212329801419Brachyspira hyodysenteriae WA1, complete genomeputative outer membrane protein (tmpB)8e-0960.5
NC_014562:1883517:189071218907121890969258Pantoea vagans C9-1 chromosome, complete genomePhage-like element PBSX protein xkdP1e-0860.1
NC_017505:96293:1152661152661164831218Neisseria meningitidis alpha710 chromosome, complete genomehypothetical protein5e-0858.2
NC_017518:98639:1176131176131188301218Neisseria meningitidis NZ-05/33 chromosome, complete genomeLysM domain-containing protein5e-0858.2
NC_011035:1974489:1994375199437519956851311Neisseria gonorrhoeae NCCP11945 chromosome, complete genomehypothetical protein5e-0857.8
NC_008767:84950:1046011046011058181218Neisseria meningitidis FAM18, complete genomeputative periplasmic protein (possibly peptidoglycan-binding)7e-0857.4
NC_017517:98554:1181251181251193421218Neisseria meningitidis M01-240355 chromosome, complete genomeLysM domain-containing protein8e-0857.4
NC_017516:96879:1166881166881179051218Neisseria meningitidis H44/76 chromosome, complete genomeLysM domain-containing protein8e-0857.4
NC_017501:96211:1149691149691161861218Neisseria meningitidis 8013, complete genomeputative peptidoglycan-binding periplasmic protein8e-0857.4
NC_017515:76861:1226621226621238791218Neisseria meningitidis M04-240196 chromosome, complete genomeLysM domain-containing protein8e-0857
NC_003112:96815:1166241166241179551332Neisseria meningitidis MC58, complete genomehypothetical protein8e-0857
NC_014150:2501299:2514205251420525157071503Brachyspira murdochii DSM 12563 chromosome, complete genomePeptidoglycan-binding lysin domain protein4e-0755.1
NC_002927:506183:537246537246537797552Bordetella bronchiseptica RB50, complete genomehypothetical protein4e-0755.1
NC_002928:507749:535893535893536444552Bordetella parapertussis 12822, complete genomehypothetical protein4e-0755.1
NC_015422:4822636:4842117484211748433371221Alicycliphilus denitrificans K601 chromosome, complete genomepeptidoglycan-binding lysin domain-containing protein5e-0754.7
NC_017955:3731480:3790438379043837937403303Modestobacter marinus, complete genomeLysM domain peptidoglycan-binding protein7e-0753.9
NC_017511:1883663:1902873190287319042101338Neisseria gonorrhoeae TCDC-NG08107 chromosome, complete genomehypothetical protein8e-0753.9
NC_014315:2787089:279122527912252792196972Nitrosococcus watsoni C-113 chromosome, complete genomepeptidoglycan-binding lysin domain-containing protein2e-0652.8
NC_019970:439969:454879454879455790912Thermoanaerobacterium thermosaccharolyticum M0795, complete genomeputative glycosyl hydrolase3e-0652
NC_014209:1910109:1910896191089619118971002Thermoanaerobacter mathranii subsp. mathranii str. A3 chromosome,Peptidoglycan-binding domain 1 protein4e-0651.6
NC_019757:743305:756301756301756906606Cylindrospermum stagnale PCC 7417, complete genomeLysM domain-containing protein6e-0651.2
NC_011992:3615517:3633237363323736344961260Acidovorax ebreus TPSY, complete genomePeptidoglycan-binding LysM7e-0650.8