Pre_GI Gene

Some Help

Host: NC_020134 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_020134:420500 Clostridium stercorarium subsp. stercorarium DSM 8532, complete

Host Lineage: Clostridium stercorarium; Clostridium; unclassified Ruminococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: Lignocellulosic biomass has great potential as an abundant and renewable source of fermentable sugars through enzymic saccharification. Clostridium stercorarium is a catabolically versatile bacterium producing a wide range of hydrolases for degradation of biomass. Together with Clostridium thermocellum, Clostridium aldrichii and other cellulose degraders, it forms group I of the clostridia. It is moderately thermophilic, with an optimum growth temperature of 65 degrees C, and has repeatedly been isolated from self-heated compost. The two-component cellulase system of C. stercorarium has been investigated thoroughly. Due to its ability to utilize the various polysaccharides present in biomass it is especially suited for the fermentation of hemicellulose to organic solvents. Some isolates have been used in Japan in a single-step ethanol-fermenting pilot-process with lignocellulosic biomass as substrate.


StartEndLengthCDS descriptionQuickGO ontologyBLASTP
4207784220041227transposase for insertion sequence element IS905QuickGO ontologyBLASTP
4225864238031218tyrosine recombinase XerC-like proteinQuickGO ontologyBLASTP
423808424278471phage proteinQuickGO ontologyBLASTP
424294424635342putative transcriptional regulatorQuickGO ontologyBLASTP
424782424982201hypothetical protein
425238425435198hypothetical protein
425591425770180hypothetical protein
425829426758930phage-type endonucleaseQuickGO ontologyBLASTP
426773427588816protein RecTQuickGO ontologyBLASTP
42790642799893hypothetical protein
428019428897879hypothetical proteinBLASTP
428821429711891IstB domain-containing ATP-binding proteinQuickGO ontologyBLASTP
429728430090363hypothetical proteinBLASTP
430365430490126hypothetical protein
430503430868366hypothetical protein
430801430947147hypothetical protein
431165431485321hypothetical protein
431482431907426hypothetical proteinBLASTP
431904432086183hypothetical protein
432110432376267terminase small subunitQuickGO ontologyBLASTP
4323584335841227transposase for insertion sequence element IS905QuickGO ontologyBLASTP
433602433790189phage terminase large subunitQuickGO ontologyBLASTP
4338074352401434portal proteinQuickGO ontologyBLASTP
4352584365891332phage head morphogenesis protein SPP1 gp7 familyQuickGO ontologyBLASTP
436905437210306hypothetical protein
437210437575366hypothetical protein
437505438083579minor structural GP20 proteinQuickGO ontologyBLASTP
438103439026924prophage proteinQuickGO ontologyBLASTP
439220439555336bacteriophage QLRG family putative DNA packagingQuickGO ontologyBLASTP
439552439887336hypothetical proteinBLASTP
439884440372489hypothetical proteinBLASTP
440362440766405hypothetical proteinBLASTP
4407794418191041phage tail sheath proteinQuickGO ontologyBLASTP
441835442311477XkdM protein phage-like element PBSXQuickGO ontologyBLASTP
442388442732345hypothetical proteinBLASTP
442816443217402XkdN-like proteinQuickGO ontologyBLASTP
4434354453031869phage tape measure proteinQuickGO ontologyBLASTP
445303446001699peptidoglycan-binding lysin domain-containing proteinQuickGO ontologyBLASTP
445979446923945phage proteinQuickGO ontologyBLASTP
446920447234315hypothetical proteinBLASTP
447231447626396phage-like element PBSX protein XkdSQuickGO ontologyBLASTP