Pre_GI: BLASTP Hits

Some Help

Query: NC_008261:1048515:1052775 Clostridium perfringens ATCC 13124, complete genome

Start: 1052775, End: 1053209, Length: 435

Host Lineage: Clostridium perfringens; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: The species type strain, originally isolated from a human gas gangrene patient. Causative agent of gas gangrene. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Known opportunistic toxin-producing pathogens in animals and humans. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This organism is a causative agent of a wide spectrum of necrotic enterotoxicoses. It also causes such animal diseases as lamb dysentery, ovine enterotoxemia (struck), pulpy kidney disease in lambs and other enterotoxemias in lambs and calves. It is commonly found in the environment (soil, sewage) and in the animal and human gastrointestinal tract as a member of the normal microflora. It is a fast growing (generation time 8-10 min) anaerobic flesh-eater. Active fermentative growth is accompanied by profuse generation of molecular hydrogen and carbon dioxide. It is also oxygen tolerant which makes it an easy object to work with in laboratories. C. perfringens have been developed and the species became a model organism in clostridial genetic studies. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. All types produce the alpha toxin (phospholipase C). Type A strains that cause gas gangrene produce alpha toxin, theta (hemolysin), kappa (collagenase), mu (hyaluronidase), nu (DNAse) and neuraminidase which are all the enzymatic factors aiding the bacterium in invading and destruction of the host tissues. Type C strains produce alpha toxin, beta toxin and prefringolysin enteritis. In addition to alpha toxin, Type B strains produce beta toxin, types B and D produce the pore forming epsilon toxin and type E strains produce iota toxin.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003366:1091766:109602310960231096457435Clostridium perfringens str. 13, complete genomepropanediol utilization protein7e-78288
NC_017179:2067015:207102020710202071469450Clostridium difficile BI1, complete genomeethanolamine utilization protein EutP5e-57219
NC_013315:2059007:206301220630122063461450Clostridium difficile CD196 chromosome, complete genomeethanolamine/propanediol utilization protein5e-57219
NC_015275:4493500:450542545054254505874450Clostridium lentocellum DSM 5427 chromosome, complete genomeethanolamine utilization protein, EutP3e-56216
NC_004557:2289135:230692223069222307356435Clostridium tetani E88, complete genomeethanolamine utilization protein eutP6e-36149
NC_014376:1586649:159168715916871592127441Clostridium saccharolyticum WM1 chromosome, complete genomeethanolamine utilization protein, EutP3e-35147
NC_009922:868262:869807869807870250444Alkaliphilus oremlandii OhILAs, complete genomeethanolamine utilization protein, EutP1e-33141
NC_014654:1113116:113405111340511134485435Halanaerobium sp. 'sapolanicus' chromosome, complete genomeethanolamine utilization protein, EutP7e-33139
NC_013517:1055854:112420311242031124637435Sebaldella termitidis ATCC 33386, complete genomeethanolamine utilization protein, EutP1e-30131
NC_011740:2072173:207553120755312075980450Escherichia fergusonii ATCC 35469, complete genomeconserved hypothetical protein; putative Propanediol utilization protein pduV1e-29128
NC_013192:63111:825708257083004435Leptotrichia buccalis DSM 1135, complete genomeethanolamine utilization protein, EutP1e-29128
NC_009633:286677:290757290757291185429Alkaliphilus metalliredigens QYMF chromosome, complete genomeethanolamine utilization protein, EutP1e-28125
NC_008497:1575884:158233515823351582766432Lactobacillus brevis ATCC 367, complete genome1e-28125
NC_012491:5914500:593564659356465936089444Brevibacillus brevis NBRC 100599, complete genomehypothetical protein2e-26117
NC_007519:3240864:325996132599613260383423Desulfovibrio alaskensis G20 chromosome, complete genomeethanolamine utilization protein-like3e-22103
NC_014614:284005:289739289739290170432Clostridium sticklandii, complete genomeEthanolamine utilization protein eutP2e-22103
NC_016894:3329562:333873233387323339232501Acetobacterium woodii DSM 1030 chromosome, complete genomeethanolamine/propanediol utilization protein PduV31e-21101
NC_016048:1694631:169797216979721698505534Oscillibacter valericigenes Sjm18-20, complete genomehypothetical protein4e-2096.7
NC_009253:1381401:138261913826191383053435Desulfotomaculum reducens MI-1 chromosome, complete genomeethanolamine utilization protein eutP3e-1993.6
NC_016584:1998000:201833620183362018785450Desulfosporosinus orientis DSM 765 chromosome, complete genomeethanolamine utilization protein1e-1892
NC_010674:1496500:150732615073261507784459Clostridium botulinum B str. Eklund 17B, complete genomelysine-sensitive aspartokinase III4e-1786.7
NC_009633:3933941:394790839479083948357450Alkaliphilus metalliredigens QYMF chromosome, complete genomehypothetical protein9e-1785.5
NC_016584:5625975:563846656384665638900435Desulfosporosinus orientis DSM 765 chromosome, complete genomeethanolamine utilization protein2e-1684.3
NC_010723:1465097:147753914775391477979441Clostridium botulinum E3 str. Alaska E43, complete genomeGTP-binding protein, EutP/PduV family2e-1684.3
NC_018870:705900:719392719392719898507Thermacetogenium phaeum DSM 12270 chromosome, complete genomeethanolamine/propanediol utilization protein4e-1683.2
NC_009922:2556033:257127525712752571715441Alkaliphilus oremlandii OhILAs, complete genomeethanolamine utilization protein8e-1682.4
NC_012563:2384500:239692523969252397371447Clostridium botulinum A2 str. Kyoto, complete genomeGTP-binding protein, EutP/PduV family1e-1375.1
NC_009697:2173000:218216321821632182609447Clostridium botulinum A str. ATCC 19397 chromosome, completeEutP/PduV family GTP-binding protein1e-1375.1
NC_009698:2171151:218238221823822182828447Clostridium botulinum A str. Hall chromosome, complete genomeEutP/PduV family GTP-binding protein1e-1375.1
NC_004741:2526421:254110625411062541585480Shigella flexneri 2a str. 2457T, complete genomehypothetical protein1e-1375.1
NC_004337:2548288:256297325629732563452480Shigella flexneri 2a str. 301, complete genomehypothetical protein1e-1375.1
NC_008258:2542863:255878725587872559266480Shigella flexneri 5 str. 8401, complete genomehypothetical protein1e-1375.1
NC_012658:2295536:231089123108912311337447Clostridium botulinum Ba4 str. 657 chromosome, complete genomeGTP-binding protein2e-1374.3
NC_014019:3543389:355882635588263559323498Bacillus megaterium QM B1551 chromosome, complete genomeethanolamine utilization protein EutP6e-1372.8
NC_009699:2287893:230272223027222303168447Clostridium botulinum F str. Langeland chromosome, complete genomeEutP/PduV family GTP-binding protein7e-1372.4
NC_009495:2244774:225352122535212253949429Clostridium botulinum A str. ATCC 3502 chromosome, complete genomeGTP-binding protein, EutP/PduV family2e-1271.2
NC_010001:1745089:175939117593911759822432Clostridium phytofermentans ISDg, complete genomeGTP-binding protein, EutP/PduV family1e-1168.9
NC_014538:985339:100545810054581005907450Thermoanaerobacter sp. X513 chromosome, complete genomeethanolamine utilization protein EutP1e-1168.6
NC_017297:2288000:230294823029482303265318Clostridium botulinum F str. 230613 chromosome, complete genomeGTP-binding protein, EutP/PduV family9e-1165.5
NC_004557:1553000:156142915614291561872444Clostridium tetani E88, complete genomelysine-sensitive aspartokinase III6e-1062.8