Pre_GI: BLASTP Hits

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Query: NC_008258:2190635:2190635 Shigella flexneri 5 str. 8401, complete genome

Start: 2190635, End: 2191456, Length: 822

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. Shigella spp. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_004741:2169877:216987721698772170698822Shigella flexneri 2a str. 2457T, complete genomehypothetical protein2e-162571
NC_004337:2185282:218835321883532189174822Shigella flexneri 2a str. 301, complete genomehypothetical protein2e-162571
NC_017328:2225418:222924322292432230073831Shigella flexneri 2002017 chromosome, complete genomeputative Lyzozyme M1 (1,4-beta-N-acetylmuramidase)3e-162570
NC_000913:2180855:218085521808552181673819Escherichia coli K12, complete genomepredicted hydrolase1e-150532
NC_010468:1694729:171134617113461712164819Escherichia coli ATCC 8739, complete genomeglycoside hydrolase family 251e-150532
NC_010473:2267851:227186322718632272681819Escherichia coli str. K-12 substr. DH10B, complete genomepredicted hydrolase1e-150532
AC_000091:2185369:218616721861672186985819Escherichia coli W3110 DNA, complete genomepredicted hydrolase1e-150532
NC_012759:2069326:207333820733382074156819Escherichia coli BW2952 chromosome, complete genomeputative hydrolase1e-150532
NC_009800:2225182:222518222251822226000819Escherichia coli HS, complete genomeglycosyl hydrolase family 255e-150530
NC_007384:2251792:225453022545302255357828Shigella sonnei Ss046, complete genomehypothetical protein2e-149528
NC_016822:2341127:234386523438652344683819Shigella sonnei 53G, complete genomehypothetical protein3e-149527
NC_011741:2239637:224237522423752243193819Escherichia coli IAI1 chromosome, complete genomeputative membrane-bound hydrolase6e-149526
CP002185:2347413:235142523514252352243819Escherichia coli W, complete genomepredicted hydrolase6e-149526
CU928160:2239637:224237522423752243193819Escherichia coli IAI1 chromosome, complete genomeputative membrane-bound hydrolase6e-149526
NC_011353:2852362:285316028531602853978819Escherichia coli O157:H7 str. EC4115 chromosome, complete genomeglycosyl hydrolase family 252e-148525
NC_013008:2851342:285214028521402852958819Escherichia coli O157:H7 str. TW14359 chromosome, complete genomehydrolase2e-148525
NC_011750:955451:972630972630973448819Escherichia coli IAI39 chromosome, complete genomeputative membrane-bound hydrolase1e-148525
NC_002695:2854629:285636628563662857193828Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein2e-148524
NC_002655:2925787:292658529265852927412828Escherichia coli O157:H7 EDL933, complete genomehypothetical protein2e-148524
NC_011745:2399313:240205124020512402869819Escherichia coli ED1a chromosome, complete genomeputative membrane-bound hydrolase5e-148523
NC_011740:2220251:223393922339392234856918Escherichia fergusonii ATCC 35469, complete genomeputative membrane-bound hydrolase2e-140498
NC_015164:1120288:112028811202881121226939Bacteroides salanitronis DSM 18170 chromosome, complete genomeglycoside hydrolase family 254e-43175
NC_013730:834500:859135859135859908774Spirosoma linguale DSM 74, complete genomeglycoside hydrolase family 251e-41170
NC_016641:2950000:296913929691392970104966Paenibacillus terrae HPL-003 chromosome, complete genome1,4-beta-N-acetylmuramidase1e-33143
NC_014483:1179286:119775611977561198721966Paenibacillus polymyxa E681 chromosome, complete genomeLyzozyme M1 (1,4-beta-N-acetylmuramidase)4e-32138
NC_010611:208268:233076233076233834759Acinetobacter baumannii ACICU, complete genomeLyzozyme M1 (1,4-beta-N-acetylmuramidase)9e-32137
NC_013517:1823926:182926318292631829970708Sebaldella termitidis ATCC 33386, complete genomeglycoside hydrolase family 253e-28125
NC_003911:3453764:345734234573423458151810Silicibacter pomeroyi DSS-3, complete genomeglycosyl hydrolase, family 253e-26119
NC_016641:3772981:378394537839453784940996Paenibacillus terrae HPL-003 chromosome, complete genomeglycoside hydrolase4e-25115
NC_012914:1851102:185155018515501852359810Paenibacillus sp. JDR-2, complete genomeglycoside hydrolase family 253e-22105
NC_011886:2696671:2701285270128527040922808Arthrobacter chlorophenolicus A6, complete genomeLysozyme1e-1997.4
NC_015145:2693749:2697019269701926999372919Arthrobacter phenanthrenivorans Sphe3 chromosome, complete genomelysozyme M1 (1,4-beta-N-acetylmuramidase)4e-1995.5
NC_010723:915697:934757934757935551795Clostridium botulinum E3 str. Alaska E43, complete genomeglycosyl hydrolase, family 256e-1788.2
NC_008541:2989500:2995763299576329982522490Arthrobacter sp. FB24 chromosome 1, complete sequenceglycoside hydrolase, family 253e-1685.9
NC_006087:2326143:234351923435192344244726Leifsonia xyli subsp. xyli str. CTCB07, complete genomelysozyme1e-1584
NC_010723:2231834:223538022353802236177798Clostridium botulinum E3 str. Alaska E43, complete genomelysozyme M11e-1584
NC_010674:2435241:243792624379262438723798Clostridium botulinum B str. Eklund 17B, complete genomelysozyme M19e-1580.9
NC_009706:3291330:331231733123173313237921Clostridium kluyveri DSM 555 chromosome, complete genomeglycosyl hydrolase1e-1480.5
NC_011837:3226500:324381932438193244739921Clostridium kluyveri NBRC 12016, complete genomehypothetical protein1e-1480.5
NC_014828:501342:5169305169305181051176Ethanoligenens harbinense YUAN-3 chromosome, complete genomeglycoside hydrolase family 252e-1480.1
NC_010520:2101515:210740621074062108230825Clostridium botulinum A3 str. Loch Maree, complete genomeautolytic lysozyme (1,4-beta-N-acetylmuramidase)(Autolysin)2e-1479.7
NC_014643:1986440:2007688200768820091631476Rothia dentocariosa ATCC 17931 chromosome, complete genomelysozyme M12e-1479.7
NC_014828:107802:110949110949111866918Ethanoligenens harbinense YUAN-3 chromosome, complete genomeglycoside hydrolase family 259e-1477.4
NC_014039:1766049:176912617691261770004879Propionibacterium acnes SK137 chromosome, complete genomeglycosyl hydrolase family 251e-1273.9
NC_014328:3294086:331147133114713312391921Clostridium ljungdahlii ATCC 49587 chromosome, complete genomeputative cell wall hydrolase1e-1273.9
NC_013715:890784:9061699061699081151947Rothia mucilaginosa DY-18, complete genomelyzozyme M12e-1273.6
NC_017295:2022085:2022085202208520231401056Clostridium acetobutylicum EA 2018 chromosome, complete genomeN-acetylmuramidase, autolytic enzyme, family 25 of glycosyl hydrolase2e-1169.7
NC_014638:1139824:1150840115084011519131074Bifidobacterium bifidum PRL2010 chromosome, complete genomeglycosyl hydrolases family 25,lysozyme2e-1066.2
NC_016516:1751336:175873617587361759569834Propionibacterium acnes TypeIA2 P.acn33 chromosome, completelysozyme M15e-1065.1
NC_020291:5641444:565902456590245659965942Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomeglycoside hydrolase, family 251e-0963.9
NC_008530:1454118:147871914787191479597879Lactobacillus gasseri ATCC 33323, complete genomeLyzozyme M1 (1,4-beta-N-acetylmuramidase)2e-0962.8
NC_016609:701500:705027705027705770744Niastella koreensis GR20-10 chromosome, complete genomeglycoside hydrolase family protein3e-0962.8
NC_013656:1549634:155013015501301551044915Lactococcus lactis subsp. lactis KF147, complete genomephage endolysin6e-0961.6
NC_009004:2055563:206441820644182065275858Lactococcus lactis subsp. cremoris MG1363, complete genomebacteriophage lysin1e-0860.5
NC_014828:1987487:199104919910491991999951Ethanoligenens harbinense YUAN-3 chromosome, complete genomeglycoside hydrolase family 251e-0860.5
NC_013093:3768790:377965337796533780615963Actinosynnema mirum DSM 43827, complete genomeglycoside hydrolase family 251e-0757
NC_005773:5636606:566114256611425661621480Pseudomonas syringae pv. phaseolicola 1448A, complete genomeglycosyl hydrolase, family 251e-0757
NC_016111:1766010:180421218042121804934723Streptomyces cattleya NRRL 8057, complete genomehydrolase2e-0756.6
NC_012778:2049694:2052941205294120539481008Eubacterium eligens ATCC 27750, complete genomeGlycoside Hydrolase Family 25-like lysozyme/endolysin6e-0754.7
NC_021182:2765000:276666927666692767508840Clostridium pasteurianum BC1, complete genomelysozyme M1 (1,4-beta-N-acetylmuramidase)2e-0653.5
NC_015737:2691246:2714779271477927166351857Clostridium sp. SY8519, complete genomelyzozyme M17e-0651.2