Pre_GI: BLASTP Hits

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Query: NC_007953:1088933:1089658 Burkholderia xenovorans LB400 chromosome 3, complete sequence

Start: 1089658, End: 1090128, Length: 471

Host Lineage: Burkholderia xenovorans; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Originally identified as Pseudomonas sp. LB400 that was found in contaminated soil in upstate New York, USA, this organism is now classified in the genus Burkholderia. Polychlorinated biphenyl-degrading bacterium. Member of the genus Burkholderia are versatile organisms that occupy a surprisingly wide range of ecological niches. These bacteria are exploited for biocontrol, bioremediation, and plant growth promotion purposes. Burkholderia xenovorans has been found on fungi, animals, and from human clinical isolates such as from cystic fibrosis (CF) patients. It may be tightly associated with white-rot fungus, as the degadation of lignin by the fungus results in aromatic compounds the bacterium can then degrade. This organism is exceptionally capable of degradation of polychlorinated biphenyls (PCBs), which are environmental pollutants, and thus it may play a role in bioremediation of polluted and toxic sites and is studied as a model bioremediator. PCBs can be utilized as the sole carbon and energy source by this organism. The pathways for degradation of PCBs have been extensively characterized at both the genetic and the molecular level and have become a model system for the bacterial breakdown of these very persistent environmental contaminants.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014540:2908912:291779329177932918215423Burkholderia sp. CCGE1003 chromosome 2, complete sequenceBiopolymer transport protein ExbD/TolR1e-29128
NC_014910:2585747:260199526019952602405411Alicycliphilus denitrificans BC chromosome, complete genomebiopolymer transport protein exbd/tolr2e-25115
NC_014323:3195178:321381532138153214234420Herbaspirillum seropedicae SmR1 chromosome, complete genomebiopolymer transport ExbD/TolR protein2e-25115
NC_011992:1505106:150908715090871509497411Acidovorax ebreus TPSY, complete genomeBiopolymer transport protein ExbD/TolR4e-24110
NC_014118:2417838:243539924353992435824426Burkholderia sp. CCGE1002 chromosome chromosome 2, completeBiopolymer transport protein ExbD/TolR1e-22105
NC_002488:1:122851228512707423Xylella fastidiosa 9a5c, complete genomebiopolymer transport ExbD1 protein1e-1892.4
NC_009053:1785447:179758017975801797990411Actinobacillus pleuropneumoniae L20, complete genomebiopolymer transport ExbD protein2e-1891.3
NC_010939:1809446:182146818214681821878411Actinobacillus pleuropneumoniae serovar 7 str. AP76, completebiopolymer transport ExbD protein2e-1891.3
NC_010278:1749579:175830617583061758716411Actinobacillus pleuropneumoniae serovar 3 str. JL03 chromosome,biopolymer transport ExbD protein2e-1891.3
NC_004556:1:122651226512684420Xylella fastidiosa Temecula1, complete genomebiopolymer transport ExbD1 protein5e-1890.1
NC_010943:9294:126411264113054414Stenotrophomonas maltophilia K279a, complete genomeputative biopolymer transport ExbD2 protein6e-1889.7
NC_011071:10842:128571285713270414Stenotrophomonas maltophilia R551-3, complete genomeBiopolymer transport protein ExbD/TolR1e-1789
NC_006677:1391984:141283914128391413264426Gluconobacter oxydans 621H, complete genomeBiopolymer transport ExbD protein2e-1788.6
NC_011071:10842:124281242812853426Stenotrophomonas maltophilia R551-3, complete genomeBiopolymer transport protein ExbD/TolR1e-1788.6
NC_010943:9294:122121221212637426Stenotrophomonas maltophilia K279a, complete genomeputative biopolymer transport ExbD1 protein2e-1788.2
NC_002488:1:127111271113121411Xylella fastidiosa 9a5c, complete genomebiopolymer transport ExbD2 protein7e-1786.3
NC_010577:1:125731257312983411Xylella fastidiosa M23, complete genomeBiopolymer transport protein ExbD/TolR1e-1685.5
NC_004556:1:126911269113101411Xylella fastidiosa Temecula1, complete genomebiopolymer transport ExbD2 protein1e-1685.5
NC_011883:1601552:161353616135361613970435Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774,Biopolymer transport protein ExbD/TolR1e-1685.1
NC_010577:1:121561215612566411Xylella fastidiosa M23, complete genomeBiopolymer transport protein ExbD/TolR6e-1683.2
NC_014118:2417838:243583424358342436265432Burkholderia sp. CCGE1002 chromosome chromosome 2, completeBiopolymer transport protein ExbD/TolR8e-1476.3
NC_007613:2981829:300178030017803002205426Shigella boydii Sb227, complete genomeExbD2e-1374.7
NC_011296:909558:929488929488929892405Thermodesulfovibrio yellowstonii DSM 11347, complete genomeTolR protein6e-1373.2
NC_002516:1031386:105456610545661055006441Pseudomonas aeruginosa PAO1, complete genomeTolR protein8e-1372.8
NC_011770:4763506:478338547833854783825441Pseudomonas aeruginosa LESB58, complete genomeTolR protein8e-1372.8
NC_008463:4566976:459652945965294596969441Pseudomonas aeruginosa UCBPP-PA14, complete genomeTolR protein8e-1372.8
NC_018080:4465618:448459944845994485039441Pseudomonas aeruginosa DK2 chromosome, complete genomeTolR protein8e-1372.8
NC_014924:725380:750181750181750609429Pseudoxanthomonas suwonensis 11-1 chromosome, complete genomeprotein TolR3e-1271.2
NC_014733:107394:133229133229133636408Methylovorus sp. MP688 chromosome, complete genomebiopolymer transport protein exbd/tolr4e-1270.5
NC_008011:860000:873921873921874355435Lawsonia intracellularis PHE/MN1-00, complete genomeBiopolymer transport protein7e-1269.7
NC_016024:156000:161382161382161813432Candidatus Chloracidobacterium thermophilum B chromosome chromosomebiopolymer transport protein6e-1269.7
NC_014315:114151:138951138951139397447Nitrosococcus watsoni C-113 chromosome, complete genomeprotein TolR9e-1269.3
NC_003143:741169:745740745740746171432Yersinia pestis CO92, complete genomeExbD/TolR-family transport protein1e-1168.9
NC_004088:3859173:387636138763613876792432Yersinia pestis KIM, complete genomeTonB-complex protein1e-1168.9
NC_009381:522731:527308527308527733426Yersinia pestis Pestoides F chromosome, complete genomebiopolymer transport protein ExbD1e-1168.9
NC_008149:650706:655283655283655708426Yersinia pestis Nepal516, complete genomeExbD/TolR-family transport protein1e-1168.9
NC_008150:3430000:344724334472433447668426Yersinia pestis Antiqua, complete genomeExbD/TolR-family transport protein1e-1168.9
NC_010465:733916:737503737503737934432Yersinia pseudotuberculosis YPIII, complete genomeTonB system transport protein ExbD1e-1168.9
NC_018012:1935500:195440119544011954844444Thiocystis violascens DSM 198 chromosome, complete genomecell division and transport-associated protein TolR1e-1168.9
NC_010159:259695:276883276883277314432Yersinia pestis Angola, complete genometonB system transport protein ExbD1e-1168.9
NC_005810:3333000:333768233376823338113432Yersinia pestis biovar Microtus str. 91001, complete genomebiopolymer transport protein ExbD1e-1168.9
NC_009708:692508:697133697133697564432Yersinia pseudotuberculosis IP 31758 chromosome, complete genomebiopolymer transport protein ExbD1e-1168.9
NC_014029:792719:797284797284797715432Yersinia pestis Z176003 chromosome, complete genomeExbD/TolR-family transport protein1e-1168.9
NC_017154:734875:739446739446739877432Yersinia pestis D106004 chromosome, complete genomeExbD/TolR-family transport protein1e-1168.9
NC_017160:737000:741625741625742056432Yersinia pestis D182038 chromosome, complete genomeExbD/TolR-family transport protein1e-1168.9
NC_017168:341233:359131359131359562432Yersinia pestis A1122 chromosome, complete genomebiopolymer transport protein ExbD1e-1168.9
NC_017265:3724500:374172137417213742152432Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,membrane spanning protein in TonB-ExbB-ExbD complex1e-1168.9
NC_004578:4465247:448182944818294482293465Pseudomonas syringae pv. tomato str. DC3000, complete genometolR protein1e-1168.9
NC_004129:5481629:549889654988965499348453Pseudomonas fluorescens Pf-5, complete genomebiopolymer transport protein TolR2e-1168.6
NC_006155:3992818:401514240151424015567426Yersinia pseudotuberculosis IP 32953, complete genomeExbD/TolR-family transport protein1e-1168.6
NC_010634:3905369:392659939265993927030432Yersinia pseudotuberculosis PB1/+, complete genomeTonB system transport protein ExbD1e-1168.6
NC_010581:561579:582308582308582775468Beijerinckia indica subsp. indica ATCC 9039, complete genomeprotein TolR2e-1168.2
NC_002977:2407392:242890124289012429305405Methylococcus capsulatus str. Bath, complete genomebiopolymer transport protein, ExbD/TolR family3e-1167.8
NC_002929:3568106:356810635681063568564459Bordetella pertussis Tohama I, complete genomeputative TolR-like translocation protein4e-1167
NC_013209:2414500:242392024239202424369450Acetobacter pasteurianus IFO 3283-01, complete genomeExbD/TolR6e-1166.2
NC_017100:2414075:242512724251272425576450Acetobacter pasteurianus IFO 3283-03, complete genomeExbD/TolR6e-1166.2
NC_017108:2413000:242246424224642422913450Acetobacter pasteurianus IFO 3283-12, complete genomeExbD/TolR6e-1166.2
NC_017111:2413000:242248224224822422931450Acetobacter pasteurianus IFO 3283-32, complete genomeExbD/TolR6e-1166.2
NC_017121:2413000:242246924224692422918450Acetobacter pasteurianus IFO 3283-07, complete genomeExbD/TolR6e-1166.2
NC_017125:2415500:242510724251072425556450Acetobacter pasteurianus IFO 3283-22, complete genomeExbD/TolR6e-1166.2
NC_017146:2416000:242514924251492425598450Acetobacter pasteurianus IFO 3283-26, complete genomeExbD/TolR6e-1166.2
NC_005773:208000:230750230750231175426Pseudomonas syringae pv. phaseolicola 1448A, complete genomeTonB system transport protein ExbD11e-1065.1
NC_015224:3820338:385084438508443851269426Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,biopolymer transport protein ExbD4e-1063.9
NC_008800:3955284:397258139725813973006426Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,biopolymer transport protein ExbD6e-1063.2
NC_007404:387827:389505389505389912408Thiobacillus denitrificans ATCC 25259, complete genomebiopolymer transport protein, ExbD/TolR family2e-0961.2
NC_002977:652481:668848668848669273426Methylococcus capsulatus str. Bath, complete genomebiopolymer transport protein, ExbD/TolR family3e-0960.8
NC_014761:1321187:134156413415641341959396Oceanithermus profundus DSM 14977 chromosome, complete genomebiopolymer transport protein exbd/tolr3e-0960.8
NC_009850:1601982:160470116047011605090390Arcobacter butzleri RM4018, complete genomebiopolymer transport protein ExbD5e-0960.1
NC_017187:1511567:152020815202081520597390Arcobacter butzleri ED-1, complete genomebiopolymer transport protein ExbD5e-0960.1
NC_012440:373863:380844380844381248405Persephonella marina EX-H1, complete genomebiopolymer transport protein ExbD5e-0960.1
NC_016024:156000:161937161937162368432Candidatus Chloracidobacterium thermophilum B chromosome chromosomebiopolymer transport protein6e-0959.7
NC_007760:308500:310979310979311425447Anaeromyxobacter dehalogenans 2CP-C, complete genomeBiopolymer transport protein ExbD/TolR2e-0858.5
NC_011145:306623:313519313519313965447Anaeromyxobacter sp. K, complete genomeBiopolymer transport protein ExbD/TolR2e-0858.5
NC_011891:315182:322069322069322515447Anaeromyxobacter dehalogenans 2CP-1, complete genomeBiopolymer transport protein ExbD/TolR2e-0858.2
NC_008340:277223:278226278226278675450Alkalilimnicola ehrlichei MLHE-1, complete genomeBiopolymer transport protein ExbD/TolR2e-0858.2
NC_017192:2114433:212032021203202120709390Arcobacter sp. L, complete genomebiopolymer transport protein ExbD2e-0857.8
NC_008783:177161:185469185469185927459Bartonella bacilliformis KC583, complete genomeTonB system transport protein ExbD3e-0857.8
NC_008781:3056407:307737830773783077812435Polaromonas naphthalenivorans CJ2, complete genomeBiopolymer transport protein ExbD/TolR3e-0857.4
NC_014217:800406:801486801486802025540Starkeya novella DSM 506 chromosome, complete genomeTonB system transport protein ExbD8e-0856.2
NC_004757:230541:250127250127250543417Nitrosomonas europaea ATCC 19718, complete genomeBiopolymer transport protein ExbD/TolR8e-0856.2
NC_014394:2765261:278552127855212785928408Gallionella capsiferriformans ES-2 chromosome, complete genomeprotein TolR7e-0856.2
NC_008576:4467745:447532944753294475742414Magnetococcus sp. MC-1, complete genomeBiopolymer transport protein ExbD/TolR9e-0855.8
NC_011761:684969:696141696141696539399Acidithiobacillus ferrooxidans ATCC 23270 chromosome, completeExbD/TolR family biopolymer transport protein1e-0755.5
NC_011206:863987:875159875159875557399Acidithiobacillus ferrooxidans ATCC 53993, complete genomeBiopolymer transport protein ExbD/TolR1e-0755.5
NC_008783:145305:159281159281159733453Bartonella bacilliformis KC583, complete genomeprotein TolR1e-0755.5
NC_007973:2888824:291116429111642911601438Ralstonia metallidurans CH34 chromosome 1, complete sequenceBiopolymer transport protein ExbD/TolR2e-0755.1
NC_012856:737170:758360758360758794435Ralstonia pickettii 12D chromosome 1, complete genomeprotein TolR3e-0754.3
NC_010682:701912:720524720524720958435Ralstonia pickettii 12J chromosome 1, complete sequenceprotein TolR4e-0753.9
NC_008027:5576458:559502655950265595427402Pseudomonas entomophila L48, complete genomeBiopolymer transport protein ExbD/TolR5e-0753.5
NC_003902:2469500:250536925053692505806438Xanthomonas campestris pv. campestris str. ATCC 33913, completebiopolymer transport protein4e-0650.4
NC_013421:4714478:475547647554764755877402Pectobacterium wasabiae WPP163, complete genomeBiopolymer transport protein ExbD/TolR4e-0650.4
NC_015726:2817352:283644228364422836885444Cupriavidus necator N-1 chromosome 1, complete sequencebiopolymer transport protein ExbD4e-0650.4
NC_008599:1489868:149940114994011499793393Campylobacter fetus subsp. fetus 82-40, complete genomeexbd olr family transport protein4e-0650.4
NC_003919:2435058:243459724345972435061465Xanthomonas axonopodis pv. citri str. 306, complete genomebiopolymer transport protein5e-0650.1
NC_014311:2733897:273631027363102736744435Ralstonia solanacearum PSI07 chromosome, complete genomeprotein tolR, component of the tol-pal system5e-0650.1
NC_015276:2171355:217446821744682174890423Marinomonas mediterranea MMB-1 chromosome, complete genomeBiopolymer transport protein ExbD/TolR9e-0649.3