Pre_GI: BLASTP Hits

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Query: NC_005126:949226:967712 Photorhabdus luminescens subsp. laumondii TTO1, complete genome

Start: 967712, End: 968194, Length: 483

Host Lineage: Photorhabdus luminescens; Photorhabdus; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated on Trinidad and Tobago. It is a symbiont of the nematode Heterorhabditis bacteriophora. Bioluminescent bacterium. This organism is unusual in that it is symbiotic within one insect, and pathogenic in another, the only organism that is known to exhibit this dual phenotype. Enzymes are then released by the bacteria that result in rapid degradation of the insect body, allowing both bacteria and nematode to feed and reproduce. During this period Photorhabdus luminescens releases bacteriocidal products, including antibiotics and bacteriocins, that prevent infection of the larva by competitive microbes. The result is promotion of Photorhabdus luminescens-nematode interactions that result in continuation of the symbiotic relationship. In order to engage in a symbiotic relationship with the nematode and a pathogenic one with the insect larva, the bacterium encodes specific factors that encourage both. These include a large number of genes that code for secreted toxins and enzymes, as well as genes that encode products for the production of antibiotics and bacteriocins. Secretion of these products occurs by an array of systems including type I, type II, and type III secretion systems. The type III system is closely related to the Yersinia plasmid-encoded type III system. Genes that promote symbiotic relationships are also encoded on genomic islands on the chromosome including some that affect nematode development. Virulence genes appear to be active during exponential growth. Symbiotic genes appear to function during stationary phase (post-exponential) growth. The switch from one state to another is controlled. Photorhabdus luminescens is capable of giving off light, a complex process that requires the products of the lux operon.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012962:869295:882141882141882623483Photorhabdus asymbiotica, complete genomepts system, n-acetylgalactosamine-specific iib component 2 (eiib-aga' (n-acetylgalactosamine-permease iib component 2) (phosphotransferas enzyme ii, b2e-79294
NC_017328:3289853:331080233108023311311510Shigella flexneri 2002017 chromosome, complete genomePTS system, cytoplasmic, N-acetylgalactosamine-specific IIB component 26e-48189
NC_013941:3884725:390905839090583909567510Escherichia coli O55:H7 str. CB9615 chromosome, complete genomePTS system subunit IIB6e-48189
NC_004741:3240909:326185732618573262366510Shigella flexneri 2a str. 2457T, complete genomecytoplasmic transport protein N-acetylgalactosamine-specific IIB component 2 (EIIB-AGA)6e-48189
NC_004337:3249791:327073932707393271248510Shigella flexneri 2a str. 301, complete genomecytoplasmic transport protein N-acetylgalactosamine-specific IIB component 2 (EIIB-AGA)6e-48189
NC_010473:3354052:337598433759843376457474Escherichia coli str. K-12 substr. DH10B, complete genomeN-acetylgalactosamine-specific enzyme IIB component of PTS1e-47188
AC_000091:3258377:328007232800723280545474Escherichia coli W3110 DNA, complete genomeN-acetylgalactosamine-specific enzyme IIB component of PTS1e-47188
NC_012759:3143455:316538731653873165860474Escherichia coli BW2952 chromosome, complete genomePTS system N-acetylgalactosamine-specific transporter subunit IIB1e-47188
CP002185:3475991:349792134979213498394474Escherichia coli W, complete genomeN-acetylgalactosamine-specific enzyme IIB component of PTS1e-47188
NC_012967:3191319:321314532131453213618474Escherichia coli B str. REL606 chromosome, complete genomePTS system N-acetylgalactosamine-specific transporter subunit IIB1e-47188
NC_010067:1116148:112511011251101125607498Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein6e-37152
NC_009442:1158268:116603411660341166525492Streptococcus suis 05ZYH33 chromosome, complete genomephosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB5e-33139
NC_016612:2902628:292860929286092929085477Klebsiella oxytoca KCTC 1686 chromosome, complete genomePTS system fructose-specific transporter subunit IIB4e-21100
NC_016023:875416:885400885400885882483Bacillus coagulans 36D1 chromosome, complete genomePTS system sorbose subfamily transporter subunit IIB3e-2097.4
NC_013199:392450:411366411366411860495Lactobacillus rhamnosus Lc 705, complete genomePTS system, sorbose IIB component4e-2097.1
NC_005139:518760:525878525878526366489Vibrio vulnificus YJ016 chromosome I, complete sequencephosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB7e-2096.3
NC_013192:2434664:245368324536832454174492Leptotrichia buccalis DSM 1135, complete genomePTS system, mannose/fructose/sorbose family, IIB subunit7e-2096.3
NC_013171:1808000:182302518230251823498474Anaerococcus prevotii DSM 20548, complete genomeprotein-N(pi)-phosphohistidine--sugar phosphotransferase3e-1994.4
NC_009617:4436837:445214844521484452639492Clostridium beijerinckii NCIMB 8052 chromosome, complete genomePTS system mannose/fructose/sorbose family transporter subunit IIB6e-1993.2
NC_010723:1379256:139787513978751398852978Clostridium botulinum E3 str. Alaska E43, complete genomePTS system, mannose/fructose/sorbose family, IIB component7e-1993.2
NC_013504:1648551:165705116570511658046996Lactobacillus johnsonii FI9785 chromosome, complete genomephosphoenolpyruvate-dependent sugar phosphotransferase system EIIAB, probably mannose specific8e-1992.8
NC_015061:3147691:314769131476913148653963Rahnella sp. Y9602 chromosome, complete genomePTS system, mannose/fructose/sorbose family, IIB subunit1e-1892
NC_017047:3212000:321229332122933213255963Rahnella aquatilis HX2 chromosome, complete genomePTS system mannose-specific transporter subunit IIAB1e-1892
NC_005362:1870620:187806118780611879056996Lactobacillus johnsonii NCC 533, complete genomephosphoenolpyruvate-dependent sugar phosphotransferase system EIIAB, probable mannose specific1e-1892
NC_015425:841754:863643863643864116474Clostridium botulinum BKT015925 chromosome, complete genomePTS system mannose/fructose/sorbose family transporter subunit IIB1e-1892
NC_016818:3148000:314822731482273149189963Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completePTS system mannose/fructose/sorbose family transporter subunit IIB2e-1891.7
NC_008530:1775841:178186117818611782859999Lactobacillus gasseri ATCC 33323, complete genomePhosphotransferase system, mannose/fructose-specific component IIA2e-1891.3
NC_008261:967973:969127969127970107981Clostridium perfringens ATCC 13124, complete genomePTS system, mannose/fructose/sorbose family, IIB component3e-1891.3
NC_014106:419511:4506944506944517011008Lactobacillus crispatus ST1, complete genomePTS system, mannose-specific IIAB component9e-1889.4
NC_015214:437733:4748524748524758621011Lactobacillus acidophilus 30SC chromosome, complete genomePTS system, mannose-specific IIAB component1e-1789
NC_014724:439594:4752374752374762471011Lactobacillus amylovorus GRL 1112 chromosome, complete genomePTS system, mannose-specific IIAB component1e-1789
NC_015389:1782825:179673517967351797214480Coriobacterium glomerans PW2 chromosome, complete genomeProtein-N(pi)-phosphohistidine--sugarphosphotran sferase1e-1788.6
NC_020409:560278:572726572726573193468Desulfovibrio piezophilus str. nov C1TLV30 chromosome, completePTS system sorbose subfamily IIB component2e-1788.2
NC_015975:1936504:195217819521781953164987Lactobacillus ruminis ATCC 27782 chromosome, complete genomePTS system, mannose-specific IIAB component2e-1788.2
NC_015602:1339067:1346038134603813470451008Lactobacillus kefiranofaciens ZW3 chromosome, complete genomeprotein-N(pi)-phosphohistidine--sugar phosphotransferase3e-1787.4
NC_014844:1634985:165960816596081660072465Desulfovibrio aespoeensis Aspo-2 chromosome, complete genomePTS system sorbose subfamily IIB component8e-1785.9
NC_012880:2399205:240136324013632402304942Dickeya dadantii Ech703, complete genomePTS system, mannose/fructose/sorbose family, IIB subunit1e-1685.5
NC_018528:1681060:1689111168911116901211011Lactobacillus helveticus R0052 chromosome, complete genomePTS system mannost-specific transporter subunits IIAB2e-1685.1
NC_011660:2509362:251816925181692519134966Listeria monocytogenes HCC23 chromosome, complete genomePTS system mannose-specific eiiab component (eiiab-man)4e-1684
NC_011294:4604283:462758746275874628048462Salmonella enterica subsp. enterica serovar Enteritidis strPTS system transporter subunit B5e-1683.2
NC_015389:1070500:110510911051091105606498Coriobacterium glomerans PW2 chromosome, complete genomePTS system sorbose subfamily IIB component8e-1682.8
NC_013192:469771:485291485291486280990Leptotrichia buccalis DSM 1135, complete genomePTS system, mannose/fructose/sorbose family, IIA subunit2e-1581.6
NC_014377:1897857:191102719110271911503477Thermosediminibacter oceani DSM 16646 chromosome, complete genomePTS system sorbose subfamily IIB component3e-1581.3
NC_014498:99015:120148120148120624477Streptococcus pneumoniae 670-6B chromosome, complete genomePTS system sugar-specific transporter subunit EIIB5e-1580.1
NC_010380:124655:145788145788146264477Streptococcus pneumoniae Hungary19A-6, complete genomephosphotransferase system sugar-specific eiib component5e-1580.1
NC_015975:1936504:195319519531951953710516Lactobacillus ruminis ATCC 27782 chromosome, complete genomePTS system, IIB component5e-1580.1
NC_002937:1706000:171632817163281716789462Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, completePTS system, IIB component7e-1579.7
NC_009089:581655:582091582091582564474Clostridium difficile 630, complete genomePTS system, IIb component7e-1579.7
NC_015519:270637:289314289314289790477Tepidanaerobacter sp. Re1 chromosome, complete genomePTS system sorbose subfamily transporter subunit IIB3e-1477.4
NC_015968:3053565:306397530639753064280306Enterobacter asburiae LF7a chromosome, complete genomePTS system sorbose subfamily transporter subunit IIB1e-1375.5
NC_015389:1977736:200771220077122008200489Coriobacterium glomerans PW2 chromosome, complete genomePTS system sorbose subfamily IIB component8e-1269.7
NC_020063:4653422:466827946682794668776498Enterobacteriaceae bacterium strain FGI 57, complete genomephosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB9e-1269.3
NC_013198:394000:417573417573418049477Lactobacillus rhamnosus GG, complete genomePTS system, IIB component9e-1269.3
NC_014334:2696000:270562927056292706099471Lactobacillus casei str. Zhang chromosome, complete genomePTS system sorbose subfamily transporter subunit IIB2e-1168.2
NC_012470:853561:883776883776884267492Streptococcus equi subsp. zooepidemicus, complete genomesugar phosphotransferase system (PTS), mannose/fructose family, IIB component1e-1065.5
NC_011134:1222739:122619612261961226687492Streptococcus equi subsp. zooepidemicus str. MGCS10565, completePTS system mannose/fructose family IIB component1e-1065.5
NC_016023:1769925:178681217868121787303492Bacillus coagulans 36D1 chromosome, complete genomePTS system sorbose subfamily transporter subunit IIB3e-1064.3
NC_015389:809474:818601818601819104504Coriobacterium glomerans PW2 chromosome, complete genomePTS system sorbose subfamily IIB component7e-0856.6
NC_007946:3855445:386224338622433862728486Escherichia coli UTI89, complete genomeputative phosphotransferase system protein2e-0652
NC_008563:3888232:389503038950303895515486Escherichia coli APEC O1, complete genomehypothetical protein2e-0652
NC_011742:3799788:380977838097783810263486Escherichia coli S88 chromosome, complete genomePTS system mannose/fructose-specific transporter subunit IIA2e-0652
NC_003198:3855157:387690538769053877390486Salmonella enterica subsp. enterica serovar Typhi str. CT18,putative PTS system protein7e-0649.7
NC_011149:3895921:389592138959213896406486Salmonella enterica subsp. enterica serovar Agona str. SL483,PTS system sorbose subfamily IIB component7e-0649.7
NC_011083:3985618:398561839856183986103486Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,PTS system sorbose subfamily IIB component7e-0649.7
NC_006511:3759550:375955037595503760035486Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCputative PTS system protein7e-0649.7
NC_004631:3841975:386239538623953862880486Salmonella enterica subsp. enterica serovar Typhi Ty2, completeputative PTS system protein7e-0649.7
NC_017046:3991551:399155139915513992075525Salmonella enterica subsp. enterica serovar Typhimurium str. 798PTS system transporter protein9e-0649.3