Pre_GI: BLASTP Hits

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Query: NC_004741:3240909:3261857 Shigella flexneri 2a str. 2457T, complete genome

Start: 3261857, End: 3262366, Length: 510

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This is a highly virulent strain that has been widely used for genetic and clinical research. Causes enteric disease. This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017328:3289853:331080233108023311311510Shigella flexneri 2002017 chromosome, complete genomePTS system, cytoplasmic, N-acetylgalactosamine-specific IIB component 23e-94343
NC_013941:3884725:390905839090583909567510Escherichia coli O55:H7 str. CB9615 chromosome, complete genomePTS system subunit IIB3e-94343
NC_004337:3249791:327073932707393271248510Shigella flexneri 2a str. 301, complete genomecytoplasmic transport protein N-acetylgalactosamine-specific IIB component 2 (EIIB-AGA)3e-94343
NC_012967:3191319:321314532131453213618474Escherichia coli B str. REL606 chromosome, complete genomePTS system N-acetylgalactosamine-specific transporter subunit IIB5e-87319
CP002185:3475991:349792134979213498394474Escherichia coli W, complete genomeN-acetylgalactosamine-specific enzyme IIB component of PTS5e-87319
NC_012759:3143455:316538731653873165860474Escherichia coli BW2952 chromosome, complete genomePTS system N-acetylgalactosamine-specific transporter subunit IIB1e-86318
AC_000091:3258377:328007232800723280545474Escherichia coli W3110 DNA, complete genomeN-acetylgalactosamine-specific enzyme IIB component of PTS1e-86318
NC_010473:3354052:337598433759843376457474Escherichia coli str. K-12 substr. DH10B, complete genomeN-acetylgalactosamine-specific enzyme IIB component of PTS1e-86318
NC_012962:869295:882141882141882623483Photorhabdus asymbiotica, complete genomepts system, n-acetylgalactosamine-specific iib component 2 (eiib-aga' (n-acetylgalactosamine-permease iib component 2) (phosphotransferas enzyme ii, b6e-49192
NC_005126:949226:967712967712968194483Photorhabdus luminescens subsp. laumondii TTO1, complete genomePTS system, N-acetylgalactosamine-specific IIB component 2 (EIIB-AGA') (N-acetylgalactosamine-permease IIB component 2) (Phosphotransferase enzyme II,7e-48189
NC_010067:1116148:112511011251101125607498Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein3e-38157
NC_009442:1158268:116603411660341166525492Streptococcus suis 05ZYH33 chromosome, complete genomephosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB1e-32139
NC_005139:518760:525878525878526366489Vibrio vulnificus YJ016 chromosome I, complete sequencephosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB6e-31133
NC_016612:2902628:292860929286092929085477Klebsiella oxytoca KCTC 1686 chromosome, complete genomePTS system fructose-specific transporter subunit IIB3e-24111
NC_015425:841754:863643863643864116474Clostridium botulinum BKT015925 chromosome, complete genomePTS system mannose/fructose/sorbose family transporter subunit IIB5e-24110
NC_017047:3212000:321229332122933213255963Rahnella aquatilis HX2 chromosome, complete genomePTS system mannose-specific transporter subunit IIAB3e-23107
NC_015061:3147691:314769131476913148653963Rahnella sp. Y9602 chromosome, complete genomePTS system, mannose/fructose/sorbose family, IIB subunit3e-23107
NC_013199:392450:411366411366411860495Lactobacillus rhamnosus Lc 705, complete genomePTS system, sorbose IIB component4e-23107
NC_016818:3148000:314822731482273149189963Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completePTS system mannose/fructose/sorbose family transporter subunit IIB8e-23106
NC_012880:2399205:240136324013632402304942Dickeya dadantii Ech703, complete genomePTS system, mannose/fructose/sorbose family, IIB subunit6e-23106
NC_013192:2434664:245368324536832454174492Leptotrichia buccalis DSM 1135, complete genomePTS system, mannose/fructose/sorbose family, IIB subunit5e-22103
NC_013171:1808000:182302518230251823498474Anaerococcus prevotii DSM 20548, complete genomeprotein-N(pi)-phosphohistidine--sugar phosphotransferase3e-21101
NC_010723:1379256:139787513978751398852978Clostridium botulinum E3 str. Alaska E43, complete genomePTS system, mannose/fructose/sorbose family, IIB component1e-2099
NC_015389:1070500:110510911051091105606498Coriobacterium glomerans PW2 chromosome, complete genomePTS system sorbose subfamily IIB component5e-2097.1
NC_014498:99015:120148120148120624477Streptococcus pneumoniae 670-6B chromosome, complete genomePTS system sugar-specific transporter subunit EIIB6e-2096.7
NC_010380:124655:145788145788146264477Streptococcus pneumoniae Hungary19A-6, complete genomephosphotransferase system sugar-specific eiib component6e-2096.7
NC_009617:4436837:445214844521484452639492Clostridium beijerinckii NCIMB 8052 chromosome, complete genomePTS system mannose/fructose/sorbose family transporter subunit IIB1e-1995.9
NC_008261:967973:969127969127970107981Clostridium perfringens ATCC 13124, complete genomePTS system, mannose/fructose/sorbose family, IIB component1e-1995.5
NC_015519:270637:289314289314289790477Tepidanaerobacter sp. Re1 chromosome, complete genomePTS system sorbose subfamily transporter subunit IIB4e-1994
NC_014377:1897857:191102719110271911503477Thermosediminibacter oceani DSM 16646 chromosome, complete genomePTS system sorbose subfamily IIB component9e-1992.8
NC_020409:560278:572726572726573193468Desulfovibrio piezophilus str. nov C1TLV30 chromosome, completePTS system sorbose subfamily IIB component1e-1892
NC_013192:469771:485291485291486280990Leptotrichia buccalis DSM 1135, complete genomePTS system, mannose/fructose/sorbose family, IIA subunit7e-1889.7
NC_009089:581655:582091582091582564474Clostridium difficile 630, complete genomePTS system, IIb component2e-1788.2
NC_013504:1648551:165705116570511658046996Lactobacillus johnsonii FI9785 chromosome, complete genomephosphoenolpyruvate-dependent sugar phosphotransferase system EIIAB, probably mannose specific2e-1788.2
NC_013198:394000:417573417573418049477Lactobacillus rhamnosus GG, complete genomePTS system, IIB component2e-1788.2
NC_018528:1681060:1689111168911116901211011Lactobacillus helveticus R0052 chromosome, complete genomePTS system mannost-specific transporter subunits IIAB3e-1787.8
NC_015975:1936504:195217819521781953164987Lactobacillus ruminis ATCC 27782 chromosome, complete genomePTS system, mannose-specific IIAB component3e-1787.8
NC_014334:2696000:270562927056292706099471Lactobacillus casei str. Zhang chromosome, complete genomePTS system sorbose subfamily transporter subunit IIB3e-1787.8
NC_005362:1870620:187806118780611879056996Lactobacillus johnsonii NCC 533, complete genomephosphoenolpyruvate-dependent sugar phosphotransferase system EIIAB, probable mannose specific4e-1787.4
NC_008530:1775841:178186117818611782859999Lactobacillus gasseri ATCC 33323, complete genomePhosphotransferase system, mannose/fructose-specific component IIA5e-1787
NC_015389:1977736:200771220077122008200489Coriobacterium glomerans PW2 chromosome, complete genomePTS system sorbose subfamily IIB component8e-1786.3
NC_016023:875416:885400885400885882483Bacillus coagulans 36D1 chromosome, complete genomePTS system sorbose subfamily transporter subunit IIB9e-1786.3
NC_014844:1634985:165960816596081660072465Desulfovibrio aespoeensis Aspo-2 chromosome, complete genomePTS system sorbose subfamily IIB component1e-1685.9
NC_011660:2509362:251816925181692519134966Listeria monocytogenes HCC23 chromosome, complete genomePTS system mannose-specific eiiab component (eiiab-man)2e-1684.7
NC_002937:1706000:171632817163281716789462Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, completePTS system, IIB component3e-1684.7
NC_015389:1782825:179673517967351797214480Coriobacterium glomerans PW2 chromosome, complete genomeProtein-N(pi)-phosphohistidine--sugarphosphotran sferase3e-1684.7
NC_017046:3991551:399155139915513992075525Salmonella enterica subsp. enterica serovar Typhimurium str. 798PTS system transporter protein5e-1683.6
NC_015602:1339067:1346038134603813470451008Lactobacillus kefiranofaciens ZW3 chromosome, complete genomeprotein-N(pi)-phosphohistidine--sugar phosphotransferase6e-1683.2
NC_015968:3053565:306397530639753064280306Enterobacter asburiae LF7a chromosome, complete genomePTS system sorbose subfamily transporter subunit IIB1e-1582.4
NC_011294:4604283:462758746275874628048462Salmonella enterica subsp. enterica serovar Enteritidis strPTS system transporter subunit B2e-1582
NC_014106:419511:4506944506944517011008Lactobacillus crispatus ST1, complete genomePTS system, mannose-specific IIAB component2e-1581.6
NC_009792:4693152:471149447114944711979486Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein3e-1581.3
NC_014724:439594:4752374752374762471011Lactobacillus amylovorus GRL 1112 chromosome, complete genomePTS system, mannose-specific IIAB component3e-1581.3
NC_015214:437733:4748524748524758621011Lactobacillus acidophilus 30SC chromosome, complete genomePTS system, mannose-specific IIAB component3e-1581.3
NC_004631:3841975:386239538623953862880486Salmonella enterica subsp. enterica serovar Typhi Ty2, completeputative PTS system protein3e-1580.9
NC_006511:3759550:375955037595503760035486Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCputative PTS system protein3e-1580.9
NC_011083:3985618:398561839856183986103486Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,PTS system sorbose subfamily IIB component3e-1580.9
NC_011149:3895921:389592138959213896406486Salmonella enterica subsp. enterica serovar Agona str. SL483,PTS system sorbose subfamily IIB component3e-1580.9
NC_003198:3855157:387690538769053877390486Salmonella enterica subsp. enterica serovar Typhi str. CT18,putative PTS system protein3e-1580.9
NC_015389:809474:818601818601819104504Coriobacterium glomerans PW2 chromosome, complete genomePTS system sorbose subfamily IIB component6e-1580.1
NC_015975:1936504:195319519531951953710516Lactobacillus ruminis ATCC 27782 chromosome, complete genomePTS system, IIB component8e-1579.7
NC_020063:4653422:466827946682794668776498Enterobacteriaceae bacterium strain FGI 57, complete genomephosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB5e-1373.9
NC_007946:3855445:386224338622433862728486Escherichia coli UTI89, complete genomeputative phosphotransferase system protein2e-1168.6
NC_008563:3888232:389503038950303895515486Escherichia coli APEC O1, complete genomehypothetical protein2e-1168.6
NC_011742:3799788:380977838097783810263486Escherichia coli S88 chromosome, complete genomePTS system mannose/fructose-specific transporter subunit IIA2e-1168.6
NC_014758:1489761:149108514910851491573489Calditerrivibrio nitroreducens DSM 19672 chromosome, completepts system sorbose subfamily iib component3e-1064.3
NC_012470:853561:883776883776884267492Streptococcus equi subsp. zooepidemicus, complete genomesugar phosphotransferase system (PTS), mannose/fructose family, IIB component2e-0962
NC_011134:1222739:122619612261961226687492Streptococcus equi subsp. zooepidemicus str. MGCS10565, completePTS system mannose/fructose family IIB component2e-0961.6
NC_014377:1897857:190819819081981908701504Thermosediminibacter oceani DSM 16646 chromosome, complete genomePTS system sorbose subfamily IIB component8e-0856.6
NC_016023:1769925:178681217868121787303492Bacillus coagulans 36D1 chromosome, complete genomePTS system sorbose subfamily transporter subunit IIB2e-0755.5
NC_015424:2357600:237784523778452378249405Aeromonas veronii B565 chromosome, complete genomefructose-specific phosphotransferase enzyme iib component1e-0549.7