Pre_GI: BLASTP Hits

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Query: NC_004578:6089958:6121092 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 6121092, End: 6122366, Length: 1275

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_005773:176885:1828831828831841571275Pseudomonas syringae pv. phaseolicola 1448A, complete genomeouter membrane porin, OprD family0742
NC_007005:5825925:5842863584286358441371275Pseudomonas syringae pv. syringae B728a, complete genomeouter membrane porin0734
NC_020209:5077410:5080673508067350819741302Pseudomonas poae RE*1-1-14, complete genomeouter membrane protein, oprE39e-150530
NC_010501:5442000:5457529545752954588481320Pseudomonas putida W619, complete genomeouter membrane porin2e-139495
NC_002516:1031386:1043983104398310453141332Pseudomonas aeruginosa PAO1, complete genomeBasic amino acid, basic peptide and imipenem outer membrane porin OprD precursor1e-72274
NC_015556:1188500:1198293119829311995401248Pseudomonas fulva 12-X chromosome, complete genomeouter membrane porin1e-71270
NC_010611:240839:2467232467232481321410Acinetobacter baumannii ACICU, complete genomeputative outer membrane protein7e-69261
NC_009439:2427120:2449480244948024508021323Pseudomonas mendocina ymp, complete genomeouter membrane porin3e-53209
NC_009439:1297851:1318463131846313198031341Pseudomonas mendocina ymp, complete genomeouter membrane porin2e-52207
NC_010501:30000:6908569085704281344Pseudomonas putida W619, complete genomeouter membrane porin1e-52207
NC_002947:8394:5239452394537371344Pseudomonas putida KT2440, complete genomeporin, putative1e-52207
NC_009512:27783:6436964369657121344Pseudomonas putida F1, complete genomeouter membrane porin1e-52207
NC_010322:29983:6515165151664941344Pseudomonas putida GB-1 chromosome, complete genomeouter membrane porin1e-52207
NC_017986:2548720:2598569259856925999121344Pseudomonas putida ND6 chromosome, complete genomeporin1e-52207
NC_015733:5909821:5946188594618859475311344Pseudomonas putida S16 chromosome, complete genomeouter membrane porin5e-52205
NC_012560:4929683:4951297495129749525651269Azotobacter vinelandii DJ, complete genomeBacterial outer membrane porin2e-48193
NC_021150:4929670:4951284495128449525521269Azotobacter vinelandii CA6, complete genomeouter membrane porin2e-48193
NC_012560:3200961:3222480322248032237991320Azotobacter vinelandii DJ, complete genomeOprE-like outer membrane porin7e-48191
NC_021150:3200959:3222478322247832237971320Azotobacter vinelandii CA6, complete genomeOprE-like outer membrane porin7e-48191
NC_009434:3434381:3462841346284134641151275Pseudomonas stutzeri A1501, complete genomeporin3e-46186
NC_015740:3486226:3490394349039434916561263Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, completehypothetical protein3e-46186
NC_009512:5920960:5928954592895459301951242Pseudomonas putida F1, complete genomeouter membrane porin8e-46184
NC_009439:1297851:1314978131497813163061329Pseudomonas mendocina ymp, complete genomeouter membrane porin3e-45182
NC_012660:1579204:1598386159838615996781293Pseudomonas fluorescens SBW25 chromosome, complete genomehypothetical protein9e-45181
NC_012560:5019900:5021653502165350229781326Azotobacter vinelandii DJ, complete genomeOprE-like outer membrane porin8e-45181
NC_021150:5019887:5021640502164050229651326Azotobacter vinelandii CA6, complete genomeOprE-like outer membrane porin8e-45181
NC_009439:4734237:4747711474771147490301320Pseudomonas mendocina ymp, complete genomeouter membrane porin7e-45181
NC_015410:3003417:3011502301150230126981197Pseudomonas mendocina NK-01 chromosome, complete genomeporin2e-44180
NC_010501:3448389:3457520345752034587941275Pseudomonas putida W619, complete genomeouter membrane porin3e-44179
NC_009512:2238437:2259992225999222612811290Pseudomonas putida F1, complete genomeouter membrane porin3e-44179
NC_002947:4293252:4294069429406942953701302Pseudomonas putida KT2440, complete genomeporin, putative2e-44179
NC_012560:1677798:1697161169716116983781218Azotobacter vinelandii DJ, complete genomeBacterial outer membrane porin8e-44178
NC_021150:1677811:1697174169717416983911218Azotobacter vinelandii CA6, complete genomeouter membrane porin8e-44178
NC_010501:4989455:4996865499686549981391275Pseudomonas putida W619, complete genomeouter membrane porin3e-43176
NC_015740:1291739:1301977130197713032961320Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, completeouter membrane porin9e-43174
NC_009434:3611738:3695568369556836968871320Pseudomonas stutzeri A1501, complete genomeouter membrane porin9e-43174
NC_007492:2994036:3012598301259830138991302Pseudomonas fluorescens PfO-1, complete genomeouter membrane porin2e-42173
NC_012660:3320330:3339051333905133403041254Pseudomonas fluorescens SBW25 chromosome, complete genomeputative exported family S43 non-peptidase homologue1e-41171
NC_002516:2306776:2323554232355423247831230Pseudomonas aeruginosa PAO1, complete genomeprobable porin1e-41171
NC_017986:5833819:5859445585944558606831239Pseudomonas putida ND6 chromosome, complete genomeouter membrane porin8e-41168
NC_016830:6499234:6514151651415165154701320Pseudomonas fluorescens F113 chromosome, complete genomeprotein OprD4e-38159
NC_010501:3671517:3682477368247736837901314Pseudomonas putida W619, complete genomeouter membrane porin6e-37155
NC_009512:1518113:1531521153152115327471227Pseudomonas putida F1, complete genomeouter membrane porin2e-34146
NC_017986:2548720:2572480257248025737061227Pseudomonas putida ND6 chromosome, complete genomeouter membrane porin3e-33143
NC_004129:5723787:5753548575354857548671320Pseudomonas fluorescens Pf-5, complete genomeporin D9e-31134
NC_004129:1014986:1019646101964610210521407Pseudomonas fluorescens Pf-5, complete genomeouter membrane porin, OprD family2e-30133