Pre_GI Gene

Some Help

Host: NC_009512 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_009512:27783 Pseudomonas putida F1, complete genome

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain was isolated from a polluted creek in Urbana, Illinois, USA by enrichment culture with ethylbenzyne as a sole source of carbon and energy. Its ability to degrade several different compounds including benzene, toluene, and ethylbenzene makes this species useful in the bioremediation of sites contaminated with multiple aromatic hydrocarbons. Underground gasoline tanks which have developed leaks can contaminate soil and water with a variety of these compounds. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
24628277863159heavy metal efflux pump CzcA familyQuickGO ontologyBLASTP
2778328130348hypothetical proteinBLASTP
2854529204660Putative protein-S-isoprenylcysteine methyltransferase-like proteinQuickGO ontologyBLASTP
2920129476276hypothetical proteinBLASTP
2950229957456hypothetical proteinBLASTP
3009631118102340-residue YVTN family beta-propeller repeat proteinQuickGO ontologyBLASTP
3138431584201Heavy metal transportdetoxification proteinQuickGO ontologyBLASTP
31922342972376copper-translocating P-type ATPaseQuickGO ontologyBLASTP
3448234640159hypothetical protein
35432364661035hypothetical proteinBLASTP
3665037015366hypothetical proteinBLASTP
3729837546249hypothetical proteinBLASTP
3785738780924hypothetical proteinBLASTP
3898639210225hypothetical proteinBLASTP
3922539431207hypothetical proteinBLASTP
39826415231698protein of unknown function DUF1705QuickGO ontologyBLASTP
4240743312906cation diffusion facilitator family transporterQuickGO ontologyBLASTP
4347043820351hypothetical proteinBLASTP
4385344179327hypothetical proteinBLASTP
4486945543675two component heavy metal response transcriptional regulator winged helix familyQuickGO ontologyBLASTP
45540469581419heavy metal sensor signal transduction histidine kinaseQuickGO ontologyBLASTP
4701647603588hypothetical proteinBLASTP
4787048091222hypothetical proteinBLASTP
48174496281455glycosyl transferase family 39QuickGO ontologyBLASTP
4962250605984Ribonuclease IIIQuickGO ontologyBLASTP
5057150990420GtrA family proteinQuickGO ontologyBLASTP
5124852216969transcriptional regulator LysR familyQuickGO ontologyBLASTP
52427537341308phosphate-selective porin O and PQuickGO ontologyBLASTP
5375453888135hypothetical proteinBLASTP
54033550581026hypothetical proteinBLASTP
5518655410225hypothetical proteinBLASTP
55503575001998heavy metal translocating P-type ATPaseQuickGO ontologyBLASTP
5770358026324hypothetical proteinBLASTP
58189613503162heavy metal efflux pump CzcA familyQuickGO ontologyBLASTP
61375626251251efflux transporter RND family MFP subunitQuickGO ontologyBLASTP
62694638781185outer membrane efflux proteinQuickGO ontologyBLASTP
64369657121344outer membrane porinQuickGO ontologyBLASTP
6620166875675two component heavy metal response transcriptional regulator winged helix familyQuickGO ontologyBLASTP
6699367316324hypothetical proteinBLASTP