Pre_GI Gene

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Host: NC_009439 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_009439:2427120 Pseudomonas mendocina ymp, complete genome

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.


This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
242712024287781659ATP-dependent DNA ligaseQuickGO ontologyBLASTP
242877524297821008exonuclease of the beta-lactamase fold involved in RNA processing-like proteinQuickGO ontologyBLASTP
24301132430433321cytochrome c class IQuickGO ontologyBLASTP
243046824310015342Fe-2S iron-sulfur cluster binding domain-containing proteinQuickGO ontologyBLASTP
243100424331962193aldehyde oxidase and xanthine dehydrogenase molybdopterin bindingQuickGO ontologyBLASTP
243323824343861149hypothetical proteinBLASTP
24346072435509903LysR family transcriptional regulatorQuickGO ontologyBLASTP
24355062436027522DinB family proteinQuickGO ontologyBLASTP
243635224380551704ABC transporter relatedQuickGO ontologyBLASTP
24380822439017936LysR family transcriptional regulatorQuickGO ontologyBLASTP
24391732440075903LysR family transcriptional regulatorQuickGO ontologyBLASTP
24402032441033831short-chain dehydrogenasereductase SDRQuickGO ontologyBLASTP
24410672441327261hypothetical proteinBLASTP
24417152441987273CopG family transcriptional regulatorQuickGO ontologyBLASTP
24425472442891345hypothetical proteinBLASTP
244298124442431263outer membrane efflux proteinQuickGO ontologyBLASTP
244424024457001461RND family efflux transporter MFP subunitQuickGO ontologyBLASTP
244569724488463150CzcA family heavy metal efflux proteinQuickGO ontologyBLASTP
24489922449324333hypothetical proteinBLASTP
244948024508021323outer membrane porinQuickGO ontologyBLASTP
24509812451442462hypothetical proteinBLASTP
24514142452256843hypothetical proteinBLASTP
245226624533571092copper resistance B precursorQuickGO ontologyBLASTP
24533472453658312hypothetical proteinBLASTP
245367124554851815CopA family copper resistance proteinQuickGO ontologyBLASTP
24556742455880207hypothetical proteinBLASTP
24561642456424261hypothetical proteinBLASTP
24564692457305837hypothetical proteinBLASTP
24573022458096795hypothetical proteinBLASTP
24581472458461315hypothetical proteinBLASTP
24584812458681201heavy metal transportdetoxification proteinQuickGO ontologyBLASTP
24591642459469306PadR family transcriptional regulatorQuickGO ontologyBLASTP
245948024606851206chromate transporterQuickGO ontologyBLASTP
246102824633912364copper-translocating P-type ATPaseQuickGO ontologyBLASTP
24633972463645249hypothetical proteinBLASTP
24637252464258534blue type1 copper domain-containing proteinQuickGO ontologyBLASTP
24644062464963558hypothetical proteinBLASTP
24651302465489360hypothetical proteinBLASTP
24656962466373678two component heavy metal response transcriptional regulatorQuickGO ontologyBLASTP
246637624677521377heavy metal sensor signal transduction histidine kinaseQuickGO ontologyBLASTP
24677882468408621hypothetical proteinBLASTP
24688032469045243hypothetical proteinBLASTP
24691642469550387hypothetical proteinBLASTP
24701662470846681hypothetical proteinBLASTP
24708592471596738hypothetical proteinBLASTP
24716442471985342hypothetical proteinBLASTP
24720922472385294hypothetical proteinBLASTP
247239424735211128high-affinity nickel-transporterQuickGO ontologyBLASTP
24735222473962441membrane protein-like proteinQuickGO ontologyBLASTP
24739622474663702TraX family proteinQuickGO ontologyBLASTP
24749452475268324rhodanese domain-containing proteinQuickGO ontologyBLASTP
247527824766391362chromate transporterQuickGO ontologyBLASTP
24766322477552921hypothetical proteinBLASTP
24778542478813960phage integrase family proteinQuickGO ontologyBLASTP
24789962479898903hypothetical proteinBLASTP
247989524811631269hypothetical protein