Pre_GI: BLASTP Hits

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Query: NC_009439:2427120:2435506 Pseudomonas mendocina ymp, complete genome

Start: 2435506, End: 2436027, Length: 522

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015566:5197624:521033252103325210904573Serratia sp. AS12 chromosome, complete genomeDinB family protein2e-32138
NC_009832:5214850:522839052283905228962573Serratia proteamaculans 568, complete genomeDinB family protein6e-32136
NC_015424:3277292:328276932827693283293525Aeromonas veronii B565 chromosome, complete genomeDinB family8e-29126
NC_014153:2187409:219691221969122197457546Thiomonas intermedia K12 chromosome, complete genomeDinB family protein2e-22105
NC_014306:4901390:491727649172764917764489Erwinia billingiae Eb661, complete genomeDinB family protein2e-21101
NC_012660:2431803:2443804244380424451501347Pseudomonas fluorescens SBW25 chromosome, complete genomehypothetical protein5e-2097.1
NC_013283:113660:108521085211340489Cronobacter turicensis plasmid pCTU1, complete sequencehypothetical protein1e-1892.4
NC_016514:1142607:116248711624871162978492Enterobacter cloacae EcWSU1 chromosome, complete genomedinB family protein1e-1685.9
NC_004547:667988:684912684912685403492Erwinia carotovora subsp. atroseptica SCRI1043, complete genomehypothetical protein2e-1685.1
NC_020126:7372685:738366373836637384196534Myxococcus stipitatus DSM 14675, complete genomehypothetical protein9e-1579.7
NC_014501:5419958:543913554391355439662528Cyanothece sp. PCC 7822 chromosome, complete genomeDinB family protein2e-1168.9
NC_015379:3736500:375217537521753752657483Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,Putative protein dinB2e-0961.6
NC_020209:1847895:186339618633961863923528Pseudomonas poae RE*1-1-14, complete genomeDinB family protein3e-0961.2
NC_017191:3901914:390264339026433903155513Bacillus amyloliquefaciens XH7 chromosome, complete genomenuclease inhibitor2e-0858.9
NC_017188:3900951:390095139009513901463513Bacillus amyloliquefaciens TA208 chromosome, complete genomenuclease inhibitor2e-0858.9
UCMB5137:1594000:159462915946291595135507Bacillus atrophaeus UCMB-5137nuclease inhibitor4e-0857.4
NC_020272:20435:412244122441733510Bacillus amyloliquefaciens IT-45, complete genomeProtein dinB4e-0857.4
NC_009436:2056000:206705720670572067560504Enterobacter sp. 638, complete genomeDinB family protein5e-0857.4
NC_017188:1567000:158091815809181581427510Bacillus amyloliquefaciens TA208 chromosome, complete genomeDinB16e-0857
NC_017191:1568369:158222215822221582731510Bacillus amyloliquefaciens XH7 chromosome, complete genomenuclease inhibitor6e-0857
NC_020272:2077795:209098220909822091482501Bacillus amyloliquefaciens IT-45, complete genomeProtein dinB3e-0754.7
NC_013061:2055000:207020220702022070711510Pedobacter heparinus DSM 2366, complete genomeDinB family protein6e-0753.5
NC_016830:3230939:324048832404883240823336Pseudomonas fluorescens F113 chromosome, complete genomehypothetical protein2e-0652
NC_015966:521703:549719549719550207489Rhodothermus marinus SG0.5JP17-172 chromosome, complete genomeDinB family protein7e-0650.1
NC_017506:1507943:150984615098461510388543Marinobacter adhaerens HP15 chromosome, complete genomeDinB family protein9e-0649.7