Pre_GI: BLASTP Hits

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Query: NC_009439:2427120:2472092 Pseudomonas mendocina ymp, complete genome

Start: 2472092, End: 2472385, Length: 294

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015379:2751342:276752427675242767820297Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,hypothetical protein2e-32137
NC_008254:611437:616206616206616496291Mesorhizobium sp. BNC1, complete genomeprotein of unknown function DUF1567e-25112
NC_011992:1912200:192342219234221923703282Acidovorax ebreus TPSY, complete genomeprotein of unknown function DUF1567e-23105
NC_009256:1782000:178933617893361789602267Burkholderia vietnamiensis G4 chromosome 1, complete sequencehypothetical protein1e-2098.6
NC_009254:637952:657548657548657814267Burkholderia vietnamiensis G4 chromosome 3, complete sequencehypothetical protein1e-2098.6
NC_008740:3520500:354031535403153540593279Marinobacter aquaeolei VT8, complete genomeprotein of unknown function DUF1562e-2097.4
NC_011992:3752867:376283137628313763076246Acidovorax ebreus TPSY, complete genomeprotein of unknown function DUF1563e-1684
NC_011770:2804218:281586928158692816126258Pseudomonas aeruginosa LESB58, complete genomeprotein of unknown function DUF1563e-1683.6
NC_015172:1255956:126606912660691266359291Syntrophobotulus glycolicus DSM 8271 chromosome, complete genomeprotein of unknown function DUF1566e-1166.2
NC_014659:3654979:367855936785593678825267Rhodococcus equi 103S, complete genomehypothetical protein1e-0755.5
NC_013929:8474195:849384984938498494139291Streptomyces scabiei 87.22 chromosome, complete genomehypothetical protein1e-0755.5
NC_004369:41236:591545915459411258Corynebacterium efficiens YS-314, complete genomehypothetical protein1e-0755.1
NC_016593:981500:994622994622994933312Geobacillus thermoleovorans CCB_US3_UF5 chromosome, completehypothetical protein2e-0754.3
NC_016943:1560000:158039115803911580657267Blastococcus saxobsidens DD2, complete genomehypothetical protein5e-0753.1
NC_008712:250240:251886251886252143258Arthrobacter aurescens TC1 plasmid TC1, complete sequenceputative protein of unknown function5e-0753.1
NC_007759:2179000:220662622066262207021396Syntrophus aciditrophicus SB, complete genomehypothetical cytosolic protein6e-0752.8
NC_009077:4671417:469585746958574696186330Mycobacterium sp. JLS, complete genomeprotein of unknown function DUF1567e-0752.8
NC_008705:1557711:158687315868731587202330Mycobacterium sp. KMS, complete genomeprotein of unknown function DUF1569e-0752.4
NC_008146:1577604:158256515825651582894330Mycobacterium sp. MCS, complete genomeprotein of unknown function DUF1569e-0752.4
NC_014151:370882:392199392199392471273Cellulomonas flavigena DSM 20109 chromosome, complete genomeprotein of unknown function DUF1568e-0752.4
NC_021175:964224:983443983443983697255Streptococcus oligofermentans AS 1.3089, complete genomehypothetical protein8e-0752.4
NC_016887:3255500:326898432689843269253270Nocardia cyriacigeorgica GUH-2, complete genomehypothetical protein1e-0652
NC_002944:4163490:418114341811434181457315Mycobacterium avium subsp. paratuberculosis K-10, complete genomehypothetical protein1e-0652
NC_014915:2092678:209482720948272095087261Geobacillus sp. Y412MC52 chromosome, complete genomeprotein of unknown function DUF1562e-0651.2
NC_013411:2951559:295489529548952955155261Geobacillus sp. Y412MC61, complete genomeprotein of unknown function DUF1562e-0651.2
NC_014206:1497942:152023615202361520496261Geobacillus sp. C56-T3 chromosome, complete genomehypothetical protein2e-0651.2
NC_009328:2083386:210245421024542102741288Geobacillus thermodenitrificans NG80-2 chromosome, complete genomehypothetical protein3e-0650.8
NC_014814:5422972:543961654396165439945330Mycobacterium sp. Spyr1 chromosome, complete genomehypothetical protein3e-0650.8
NC_016887:1714664:175813917581391758408270Nocardia cyriacigeorgica GUH-2, complete genomehypothetical protein4e-0650.4
NC_015850:110364:154058154058154327270Acidithiobacillus caldus SM-1 chromosome, complete genomehypothetical protein4e-0650.4
NC_013715:98000:103929103929104354426Rothia mucilaginosa DY-18, complete genomehypothetical protein3e-0650.4
NC_013947:6221877:624207762420776242373297Stackebrandtia nassauensis DSM 44728 chromosome, complete genomehypothetical protein3e-0650.4
NC_006510:2110430:211258321125832112843261Geobacillus kaustophilus HTA426, complete genomehypothetical protein3e-0650.4
NC_009338:955195:957847957847958176330Mycobacterium gilvum PYR-GCK chromosome, complete genomehypothetical protein4e-0650.1
NC_021182:4022894:402785140278514028117267Clostridium pasteurianum BC1, complete genomehypothetical protein5e-0649.7
NC_013939:1841890:184514218451421845414273Deferribacter desulfuricans SSM1, complete genomehypothetical protein6e-0649.7
NC_013205:1123280:116707211670721167368297Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446,protein of unknown function DUF1568e-0649.3
NC_017955:1584269:159512415951241595429306Modestobacter marinus, complete genomeCopper-sensing transcriptional repressor csoR9e-0648.9