Pre_GI Gene

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Host: NC_009512 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_009512:5920960 Pseudomonas putida F1, complete genome

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain was isolated from a polluted creek in Urbana, Illinois, USA by enrichment culture with ethylbenzyne as a sole source of carbon and energy. Its ability to degrade several different compounds including benzene, toluene, and ethylbenzene makes this species useful in the bioremediation of sites contaminated with multiple aromatic hydrocarbons. Underground gasoline tanks which have developed leaks can contaminate soil and water with a variety of these compounds. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
592096059223601401dihydrolipoamide dehydrogenaseQuickGO ontologyBLASTP
592247259234791008Transketolase central regionQuickGO ontologyBLASTP
59234765924324849Transketolase domain proteinQuickGO ontologyBLASTP
592434359256441302major facilitator superfamily MFS_1QuickGO ontologyBLASTP
59257125926461750short-chain dehydrogenasereductase SDRQuickGO ontologyBLASTP
59266575927574918transcriptional regulator LysR familyQuickGO ontologyBLASTP
59278215928444624Methyltransferase type 12QuickGO ontologyBLASTP
592895459301951242outer membrane porinQuickGO ontologyBLASTP
59304105931339930dihydrodipicolinate synthetaseQuickGO ontologyBLASTP
593146359328541392major facilitator superfamily MFS_1QuickGO ontologyBLASTP
59334695933681213hypothetical protein
59337135933874162hypothetical protein
59341905934912723two component transcriptional regulator winged helix familyQuickGO ontologyBLASTP
593503259363091278histidine kinaseQuickGO ontologyBLASTP
59364185937254837regulatory protein IclRQuickGO ontologyBLASTP
593770859384036963-oxoacid CoA-transferase A subunitQuickGO ontologyBLASTP
593841259390536423-oxoacid CoA-transferase B subunitQuickGO ontologyBLASTP
593939959412341836glucosamine--fructose-6-phosphate aminotransferase isomerizingQuickGO ontologyBLASTP
59412385942014777transcriptional regulator DeoR familyQuickGO ontologyBLASTP
594220559435721368UDP-N-acetylglucosamine pyrophosphorylaseQuickGO ontologyBLASTP
59436915944110420ATP synthase F1 epsilon subunitQuickGO ontologyBLASTP
594415459455301377ATP synthase F1 beta subunitQuickGO ontologyBLASTP
59455585946418861ATP synthase F1 gamma subunitQuickGO ontologyBLASTP
594646759480111545ATP synthase F1 alpha subunitQuickGO ontologyBLASTP
59480335948569537ATP synthase F1 delta subunitQuickGO ontologyBLASTP
59485825949052471ATP synthase F0 B subunitQuickGO ontologyBLASTP
59491095949366258ATP synthase F0 C subunitQuickGO ontologyBLASTP
59495115950380870ATP synthase F0 A subunitQuickGO ontologyBLASTP
59503975950804408ATP synthase I chainQuickGO ontologyBLASTP
59509545951826873parB-like partition proteinQuickGO ontologyBLASTP
59518365952627792Cobyrinic acid ac-diamide synthaseQuickGO ontologyBLASTP
59526465953296651methyltransferase GidBQuickGO ontologyBLASTP
595329359551851893glucose inhibited division protein AQuickGO ontologyBLASTP