Pre_GI Gene

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Host: NC_010322 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_010322:29983 Pseudomonas putida GB-1 chromosome, complete genome

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Pseudomonas putida strain GB-1, a fresh water, Gram-negative gamma-proteobacterium, is a genetically tractable, robust manganese (Mn) oxidizer, and as such, is an ideal model for unraveling the catalytic mechanism for, and the molecular regulation of Mn(IV) oxide production and its eventual accumulation on the cell surface at the onset of stationary phase. Since its isolation from Green Bay nearly 20 years ago by Ken Nealson’s group (then at the Center for Great Lakes Studies, Univ. Wisconsin-Milwaukee, USA), it has been the non spore-forming, model organism (along with the closely-related strain MnB1) for molecular genetic studies of Mn(II) oxidization, protein transport and biofilm formation and for biochemical studies on protein purification and Mn(III)-pyoverdine binding. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
2932729986660isoprenylcysteine carboxyl methyltransferaseQuickGO ontologyBLASTP
2998330258276hypothetical proteinBLASTP
3028430739456hypothetical proteinBLASTP
30878319001023hypothetical proteinBLASTP
3216632357192heavy metal transportdetoxification proteinQuickGO ontologyBLASTP
32704352202517copper-translocating P-type ATPaseQuickGO ontologyBLASTP
3549135697207putative transcriptional regulatorQuickGO ontologyBLASTP
36052372481197hypothetical proteinBLASTP
3743237764333hypothetical proteinBLASTP
3808038328249hypothetical proteinBLASTP
3863939562924hypothetical proteinBLASTP
3974739911165hypothetical proteinBLASTP
4035740485129hypothetical proteinBLASTP
40608423051698hypothetical proteinBLASTP
4318944094906cation diffusion facilitator family transporterQuickGO ontologyBLASTP
4425244602351hypothetical proteinBLASTP
4463544961327hypothetical proteinBLASTP
4565146325675two component heavy metal response transcriptional regulatorQuickGO ontologyBLASTP
46322477401419heavy metal sensor signal transduction histidine kinaseQuickGO ontologyBLASTP
4779848385588hypothetical proteinBLASTP
4865248873222hypothetical proteinBLASTP
48956504101455glycosyl transferase family proteinQuickGO ontologyBLASTP
5040451387984ribonuclease IIIQuickGO ontologyBLASTP
5135351772420GtrA family proteinQuickGO ontologyBLASTP
5203052998969LysR family transcriptional regulatorQuickGO ontologyBLASTP
53209545161308phosphate-selective porin O and PQuickGO ontologyBLASTP
5453654670135hypothetical proteinBLASTP
54815558401026hypothetical proteinBLASTP
5596856192225hypothetical proteinBLASTP
56285582821998heavy metal translocating P-type ATPaseQuickGO ontologyBLASTP
5848558808324hypothetical proteinBLASTP
58971621323162CzcA family heavy metal efflux proteinQuickGO ontologyBLASTP
62157634071251RND family efflux transporter MFP subunitQuickGO ontologyBLASTP
63476647471272outer membrane efflux proteinQuickGO ontologyBLASTP
65151664941344outer membrane porinQuickGO ontologyBLASTP