Pre_GI Gene

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Host: NC_004129 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_004129:1014986 Pseudomonas fluorescens Pf-5, complete genome

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
10149861015954969peptide ABC transporter ATP-binding proteinQuickGO ontologyBLASTP
10159651016876912dipeptide ABC transporter permease proteinQuickGO ontologyBLASTP
101688810179521065dipeptide ABC transporter permease proteinQuickGO ontologyBLASTP
101797210195671596dipeptide ABC transporter periplasmic dipeptide-binding proteinQuickGO ontologyBLASTP
101964610210521407outer membrane porin OprD familyQuickGO ontologyBLASTP
102121910228201602dipeptide ABC transporter periplasmic peptide-binding proteinQuickGO ontologyBLASTP
102313010247551626dipeptide ABC transporter periplasmic peptide-binding proteinQuickGO ontologyBLASTP
10263011027017717Protein of unknown function DUF541 superfamilyQuickGO ontologyBLASTP
102724710285091263sensor histidine kinaseQuickGO ontologyBLASTP
10285021029062561DNA-binding response regulator Fis familyQuickGO ontologyBLASTP
102916110308881728ABC transporter ATP-binding proteinQuickGO ontologyBLASTP
10309861031177192hypothetical protein
103119110328311641phosphatidylcholine-hydrolyzing phospholipase CQuickGO ontology
10330911034032942hypothetical proteinBLASTP
103408710344673814-carboxymuconolactone decarboxylaseQuickGO ontologyBLASTP
103446410355041041K-dependent NaCa exchanger related-proteinQuickGO ontologyBLASTP
10355791035953375rplA family proteinQuickGO ontologyBLASTP