Pre_GI: BLASTP Hits

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Query: NC_004547:2810151:2825271 Erwinia carotovora subsp. atroseptica SCRI1043, complete genome

Start: 2825271, End: 2826881, Length: 1611

Host Lineage: Pectobacterium atrosepticum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (ATCC BAA-672) is a virulent blackleg isolated from the stem of a potato plant. Causative agent for blackleg and soft rot disease in potatoes. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Both Pectobacterium chrysanthemia and Pectobacterium carotovora cause soft-rot diseases of various plant hosts through degradation of the plant cell walls. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium. Pectobacterium atrosepticum is an environmentally widespread organism that causes blackleg and soft rot disease in potatoes. This organism produces pectolytic enzymes that destroy plant tissue and allow the bacteria to spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
CU928145:824367:8316568316568331821527Escherichia coli 55989 chromosome, complete genomeputative site-specific invertase; DLP12 prophage7e-93341
NC_011415:600375:6208596208596223851527Escherichia coli SE11 chromosome, complete genomeputative phage recombinase9e-93341
AC_000091:558920:5681255681255696511527Escherichia coli W3110 DNA, complete genomepredicted recombinase7e-93341
NC_000913:558920:5681255681255696511527Escherichia coli K12, complete genomeDLP12 prophage; predicted recombinase7e-93341
NC_010473:498252:5074575074575089831527Escherichia coli str. K-12 substr. DH10B, complete genomeDLP12 prophage; predicted recombinase7e-93341
NC_011353:2957962:2968757296875729702831527Escherichia coli O157:H7 str. EC4115 chromosome, complete genomerecombinase family protein7e-93341
NC_012759:461680:4708854708854724111527Escherichia coli BW2952 chromosome, complete genomeDLP12 prophage; putative recombinase7e-93341
NC_012947:3231893:3243361324336132448871527Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeRecombinase7e-93341
NC_012967:531000:5407925407925423181527Escherichia coli B str. REL606 chromosome, complete genomeputative recombinase7e-93341
NC_013008:2910567:2923628292362829251541527Escherichia coli O157:H7 str. TW14359 chromosome, complete genomeDLP12 prophage recombinase7e-93341
NC_013941:699286:7082487082487097741527Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeDLP12 prophage; recombinase7e-93341
NC_011748:824367:8316568316568331821527Escherichia coli 55989, complete genomeputative site-specific invertase; DLP12 prophage7e-93341
NC_007384:2007467:2008715200871520102351521Shigella sonnei Ss046, complete genomehypothetical bacteriophage protein4e-56219
NC_011769:3434744:3450826345082634525981773Desulfovibrio vulgaris str. 'Miyazaki F', complete genomeRecombinase3e-56219
NC_009801:1392696:1412677141267714141971521Escherichia coli E24377A, complete genomeputative recombinase1e-55218
NC_011283:2185462:2199912219991222014831572Klebsiella pneumoniae 342 chromosome, complete genomesite-specific recombinase, resolvase family2e-54213
NC_009659:3520093:3543028354302835448781851Janthinobacterium sp. Marseille chromosome, complete genomesite-specific recombinase2e-54213
NC_013850:2103469:2133323213332321348941572Klebsiella variicola At-22 chromosome, complete genomeResolvase domain protein8e-54211
NC_007519:2773000:2776921277692127788551935Desulfovibrio alaskensis G20 chromosome, complete genomehypothetical protein4e-53209
NC_007517:3524715:3540161354016135420291869Geobacter metallireducens GS-15, complete genomeResolvase-like:Recombinase5e-52206
NC_011979:646518:6672356672356690941860Geobacter sp. FRC-32, complete genomeRecombinase5e-52206
NC_016812:4246542:4250124425012442512931170Sinorhizobium fredii HH103, complete genomesite-specific recombinase3e-51203
NC_007614:109000:1135631135631151971635Nitrosospira multiformis ATCC 25196 chromosome 1, completeRecombinase9e-46185
NC_007492:3954345:3962384396238439639821599Pseudomonas fluorescens PfO-1, complete genomeRecombinase3e-45183
NC_002678:3701500:3705162370516237068981737Mesorhizobium loti MAFF303099, complete genomesite-specific recombinase3e-45183
NC_011979:773673:7870917870917889321842Geobacter sp. FRC-32, complete genomeRecombinase8e-45181
NC_007493:1672163:1704748170474817062771530Rhodobacter sphaeroides 2.4.1 chromosome 1, complete sequenceputative site-specific recombinase2e-43177
NC_012559:854507:8853478853478863481002Laribacter hongkongensis HLHK9, complete genomeRecombinase3e-42173
NC_002947:1268089:1281215128121512829061692Pseudomonas putida KT2440, complete genomerecombinase-related protein3e-42173
NC_011146:4196652:4202142420214242037791638Geobacter bemidjiensis Bem, complete genomeRecombinase6e-42172
NC_009832:1664238:1681671168167116831821512Serratia proteamaculans 568, complete genomeResolvase domain1e-41171
NC_007347:3612918:3619050361905036208191770Ralstonia eutropha JMP134 chromosome 1, complete sequenceRecombinase2e-41170
NC_007384:1086025:1089944108994410911881245Shigella sonnei Ss046, complete genomehypothetical protein7e-40165
NC_008781:2575213:2579464257946425810861623Polaromonas naphthalenivorans CJ2, complete genomeRecombinase6e-38159
NC_010338:3743000:3747659374765937493741716Caulobacter sp. K31, complete genomeRecombinase6e-38159
NC_008463:1912348:1939714193971419412911578Pseudomonas aeruginosa UCBPP-PA14, complete genomepossible recombinase8e-38158
NC_014006:850763:8565128565128582571746Sphingobium japonicum UT26S chromosome 1, complete genomeinvertase/recombinase like protein1e-37157
NC_014375:1242750:1243226124322612449291704Brevundimonas subvibrioides ATCC 15264 chromosome, complete genomeRecombinase1e-37157
NC_020209:4549563:4562999456299945646901692Pseudomonas poae RE*1-1-14, complete genomerecombinase6e-37155
NC_012988:2455807:2460335246033524620831749Methylobacterium extorquens DM4, complete genomerecombinase1e-34148
NC_004578:2560473:2566716256671625683201605Pseudomonas syringae pv. tomato str. DC3000, complete genomehypothetical protein6e-33142
NC_009778:2227627:2270858227085822726601803Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein7e-32139
NC_002947:3404000:3412988341298834146131626Pseudomonas putida KT2440, complete genomephage recombinase, putative7e-31135
NC_015633:1702000:1709920170992017117971878Vibrio anguillarum 775 chromosome chromosome I, complete sequenceSite-specific recombinase3e-30133
NC_014121:2330451:2335767233576723375361770Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completehypothetical protein4e-30133
NC_003910:486776:4939534939534959982046Colwellia psychrerythraea 34H, complete genomeputative site-specific recombinase7e-30132
NC_017047:3085000:3123842312384231255751734Rahnella aquatilis HX2 chromosome, complete genomehypothetical protein1e-28128
NC_018678:1820390:1826786182678618284561671Alteromonas macleodii str. 'English Channel 673' chromosome,site-specific recombinase5e-27122
NC_016616:760145:7740577740577757781722Dechlorosoma suillum PS chromosome, complete genomesite-specific recombinase, DNA invertase Pin1e-25118
NC_016614:1178000:1189433118943311912291797Vibrio sp. EJY3 chromosome 2, complete sequencesite-specific recombinase4e-24113
NC_017047:1796000:1800214180021418019651752Rahnella aquatilis HX2 chromosome, complete genomehypothetical protein1e-23111
NC_005070:1331741:1342597134259713446002004Synechococcus sp. WH 8102, complete genomepartial homology to phage recombinase1e-23111
NC_005070:1088808:1099790109979011016881899Synechococcus sp. WH 8102, complete genomepossible site-specific recombinase1e-23111
NC_014121:2514544:2525778252577825277872010Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completehypothetical protein4e-22106
NC_010501:908000:9248249248249264701647Pseudomonas putida W619, complete genomeResolvase domain1e-20101
NC_020211:2012480:2021007202100720226861680Serratia marcescens WW4, complete genomeputative recombinase, DLP12 prophage4e-20100
NC_016822:1431200:1439276143927614411591884Shigella sonnei 53G, complete genomehypothetical protein7e-2099
NC_016048:2873669:2896091289609128977101620Oscillibacter valericigenes Sjm18-20, complete genomeputative site-specific recombinase3e-1790.1
NC_014376:3732547:3765066376506637667331668Clostridium saccharolyticum WM1 chromosome, complete genomeRecombinase2e-1687.4
NC_014828:1987487:1994530199453019961131584Ethanoligenens harbinense YUAN-3 chromosome, complete genomeResolvase domain3e-1583.6
NC_017986:5509569:5518050551805055194201371Pseudomonas putida ND6 chromosome, complete genomephage recombinase9e-1582
NC_014393:4775452:4782362478236247839481587Clostridium cellulovorans 743B chromosome, complete genomeResolvase domain1e-1378.6
NC_016077:1876119:1899458189945819010351578Acidaminococcus intestini RyC-MR95 chromosome, complete genomeSite-specific recombinase2e-1377.4
NC_013364:1997891:200295320029532003306354Escherichia coli O111:H- str. 11128, complete genome4e-1376.6
NC_018870:2316499:2364714236471423662821569Thermacetogenium phaeum DSM 12270 chromosome, complete genomeresolvase6e-1376.3
NC_021066:3201500:3217811321781132193071497Raoultella ornithinolytica B6, complete genomeputative recombinase, DLP12 prophage7e-1375.9
NC_012781:3315614:3353118335311833547281611Eubacterium rectale ATCC 33656, complete genomesite-specific recombinase1e-1275.1
NC_014365:2037506:2051634205163420532201587Desulfarculus baarsii DSM 2075 chromosome, complete genomeResolvase domain protein2e-1274.3
NC_010320:1268355:1311640131164013132111572Thermoanaerobacter sp. X514 chromosome, complete genomeresolvase domain-containing protein4e-1273.6
NC_014538:1598106:1601171160117116027421572Thermoanaerobacter sp. X513 chromosome, complete genomeResolvase domain-containing protein4e-1273.6
NC_014246:1402500:1412236141223614137981563Mobiluncus curtisii ATCC 43063 chromosome, complete genomesite-specific recombinase5e-1273.2
NC_010337:2793667:2815262281526228168361575Heliobacterium modesticaldum Ice1, complete genomeDNA recombinase, putative2e-1171.2
NC_014393:1022843:1035656103565610372451590Clostridium cellulovorans 743B chromosome, complete genomeResolvase domain2e-1170.9
NC_021064:2001786:2010750201075020123061557Propionibacterium avidum 44067, complete genomeresolvase3e-1170.5
NC_007432:654904:7003617003617017071347Streptococcus agalactiae A909, complete genomeprophage LambdaSa04, site-specific recombinase, resolvase family3e-1170.5
NC_015425:2528549:2528549252854925301351587Clostridium botulinum BKT015925 chromosome, complete genomesite-specific recombinase, resolvase family5e-1170.1
NC_015385:2050648:2057426205742620590451620Treponema succinifaciens DSM 2489 chromosome, complete genomeRecombinase7e-1169.3
NC_015214:1853106:1860499186049918620521554Lactobacillus acidophilus 30SC chromosome, complete genomesite-specific recombinase1e-1068.6
NC_013768:1802313:1809907180990718115501644Listeria monocytogenes 08-5923, complete genomeDNA recombinase, putative1e-1068.6
NC_013766:1835964:1843176184317618448191644Listeria monocytogenes 08-5578 chromosome, complete genomeDNA recombinase1e-1068.6
NC_014219:3188128:3199496319949632009321437Bacillus selenitireducens MLS10 chromosome, complete genomeResolvase domain protein1e-1068.2
NC_015977:3424178:3431387343138734330301644Roseburia hominis A2-183 chromosome, complete genomecassette chromosome recombinase B2e-1068.2
NC_009012:3823879:10410417231620Clostridium thermocellum ATCC 27405, complete genomeRecombinase3e-1067
NC_009012:1:10410417231620Clostridium thermocellum ATCC 27405, complete genomeRecombinase3e-1067
NC_014828:1987487:1992758199275819945511794Ethanoligenens harbinense YUAN-3 chromosome, complete genomeResolvase domain5e-1066.6
NC_018870:2316499:2329010232901023305781569Thermacetogenium phaeum DSM 12270 chromosome, complete genomeresolvase6e-1066.2
NC_015977:3424178:3433031343303134346921662Roseburia hominis A2-183 chromosome, complete genomesite-specific recombinase7e-1065.9
NC_014376:2964731:2982075298207529837301656Clostridium saccharolyticum WM1 chromosome, complete genomeResolvase domain protein8e-1065.9
NC_014376:3732547:3761766376176637633911626Clostridium saccharolyticum WM1 chromosome, complete genomeRecombinase9e-1065.5
NC_018866:1328623:1346529134652913481811653Dehalobacter sp. DCA chromosome, complete genomeSite-specific recombinase1e-0965.5
NC_006582:2944237:2992454299245429938571404Bacillus clausii KSM-K16, complete genomesite-specific recombinase for integration and excision1e-0965.1
NC_016627:4323370:4327812432781243293801569Clostridium clariflavum DSM 19732 chromosome, complete genomesite-specific recombinase, DNA invertase Pin1e-0965.1
NC_014410:800500:8355538355538371211569Thermoanaerobacterium thermosaccharolyticum DSM 571 chromosome,Resolvase domain2e-0964.7
NC_012793:383612:3892203892203907161497Geobacillus sp. WCH70, complete genomeRecombinase2e-0964.7
NC_007907:3872805:3892406389240638941061701Desulfitobacterium hafniense Y51, complete genomehypothetical protein2e-0964.3
NC_010163:614634:6146346146346163521719Acholeplasma laidlawii PG-8A chromosome, complete genomeserine recombinase2e-0964.3
NC_010003:449192:4643804643804659481569Petrotoga mobilis SJ95, complete genomeResolvase domain3e-0963.9
NC_016791:3891272:3904940390494039065951656Clostridium sp. BNL1100 chromosome, complete genomesite-specific recombinase, DNA invertase Pin3e-0963.5
NC_010337:98974:1140951140951157441650Heliobacterium modesticaldum Ice1, complete genomeresolvase, n-terminal:recombinase, putative4e-0963.5
NC_016627:4270949:4288360428836042899281569Clostridium clariflavum DSM 19732 chromosome, complete genomesite-specific recombinase, DNA invertase Pin4e-0963.5
NC_011898:3367457:3370767337076733723381572Clostridium cellulolyticum H10, complete genomeResolvase domain protein5e-0963.2
NC_015500:1204501:1222227122222712239061680Treponema brennaborense DSM 12168 chromosome, complete genomeRecombinase7e-0962.8
NC_018870:757416:8074028074028090751674Thermacetogenium phaeum DSM 12270 chromosome, complete genomeresolvase7e-0962.8
NC_009706:2673906:2695449269544926970201572Clostridium kluyveri DSM 555 chromosome, complete genomehypothetical protein9e-0962.4
NC_011837:2605409:2626952262695226285231572Clostridium kluyveri NBRC 12016, complete genomehypothetical protein9e-0962.4
NC_015697:506494:5326675326675342531587Lactobacillus reuteri SD2112 chromosome, complete genomephage integrase family site-specific recombinase1e-0862
NC_014365:2843126:2857047285704728586061560Desulfarculus baarsii DSM 2075 chromosome, complete genomeResolvase domain protein2e-0861.2
NC_002936:149100:1491001491001506321533Dehalococcoides ethenogenes 195, complete genomeresolvase domain protein2e-0861.2
NC_011830:2623346:2635003263500326365831581Desulfitobacterium hafniense DCB-2, complete genomeResolvase domain protein3e-0860.8
NC_014365:2888897:2900319290031929018781560Desulfarculus baarsii DSM 2075 chromosome, complete genomeResolvase domain protein3e-0860.8
NC_013216:3473119:3480851348085134825151665Desulfotomaculum acetoxidans DSM 771, complete genomeRecombinase4e-0860.1
NC_015697:506494:5307365307365322891554Lactobacillus reuteri SD2112 chromosome, complete genomephage integrase family site-specific recombinase4e-0860.1
NC_015977:2445835:2452242245224224538281587Roseburia hominis A2-183 chromosome, complete genomehypothetical protein4e-0860.1
NC_014376:2964731:2974851297485129762241374Clostridium saccharolyticum WM1 chromosome, complete genomeResolvase domain protein4e-0860.1
NC_009089:581655:6044276044276060281602Clostridium difficile 630, complete genomeconjugative transposon site-specific recombinase4e-0860.1
NC_012667:931390:9402429402429419121671Vibrio cholerae MJ-1236 chromosome 2, complete genomehypothetical protein6e-0859.7
NC_009456:787322:8150358150358166931659Vibrio cholerae O395 chromosome 1, complete sequencehypothetical protein7e-0859.3
NC_012583:440420:4472494472494489071659Vibrio cholerae O395 chromosome chromosome II, complete sequencehypothetical protein7e-0859.3
NC_016023:2163000:2174239217423921752941056Bacillus coagulans 36D1 chromosome, complete genomerecombinase7e-0859.3
NC_017904:4742775:4779594477959447809251332Mycobacterium sp. MOTT36Y chromosome, complete genomerecombinase7e-0859.3
NC_016627:2524307:2540263254026325418131551Clostridium clariflavum DSM 19732 chromosome, complete genomesite-specific recombinase, DNA invertase Pin1e-0758.9
NC_007644:280000:2846452846452860961452Moorella thermoacetica ATCC 39073, complete genome1e-0758.9
NC_008095:2212644:2212644221264422141911548Myxococcus xanthus DK 1622, complete genomesite-specific recombinase, resolvase family1e-0758.5
NC_012416:573202:5811505811505826431494Wolbachia sp. wRi, complete genomesite-specific recombinase, resolvase family1e-0758.5
NC_012416:1079661:1087609108760910891021494Wolbachia sp. wRi, complete genomesite-specific recombinase, resolvase family1e-0758.5
NC_014623:3029853:3028327302832730298561530Stigmatella aurantiaca DW4/3-1 chromosome, complete genomesite-specific recombinase1e-0758.2
NC_008278:3169500:3172236317223631737441509Frankia alni ACN14a, complete genomehypothetical protein1e-0758.2
NC_015152:307500:3216333216333232701638Spirochaeta sp. Buddy chromosome, complete genomeresolvase domain2e-0758.2
NC_016791:3953972:3961343396134339629921650Clostridium sp. BNL1100 chromosome, complete genomesite-specific recombinase, DNA invertase Pin2e-0758.2
NC_002978:618723:6266506266506281191470Wolbachia endosymbiont of Drosophila melanogaster, complete genomeprophage LambdaW5, site-specific recombinase, resolvase family2e-0758.2
NC_014394:1815638:1825770182577018274041635Gallionella capsiferriformans ES-2 chromosome, complete genomeResolvase domain2e-0757.8
NC_009442:908507:9248809248809264421563Streptococcus suis 05ZYH33 chromosome, complete genomeDNA recombinase2e-0757.8
NC_009706:2925000:2935636293563629368411206Clostridium kluyveri DSM 555 chromosome, complete genomerecombinase-like protein2e-0757.4
NC_011837:2856500:2867138286713828683431206Clostridium kluyveri NBRC 12016, complete genomehypothetical protein2e-0757.4
NC_012914:5446366:5467858546785854693391482Paenibacillus sp. JDR-2, complete genomeResolvase domain protein3e-0757
NC_007907:5185510:5212119521211952136481530Desulfitobacterium hafniense Y51, complete genomehypothetical protein4e-0757
NC_002936:1395432:1398114139811413997781665Dehalococcoides ethenogenes 195, complete genomeresolvase domain protein4e-0756.6
NC_004463:7683426:7700024770002477015051482Bradyrhizobium japonicum USDA 110, complete genomehypothetical protein6e-0756.2
NC_013316:2033906:2043677204367720455571881Clostridium difficile R20291, complete genomesite-specific recombinase, resolvase family, putative8e-0755.8
NC_015975:558523:5608265608265623941569Lactobacillus ruminis ATCC 27782 chromosome, complete genomeRecombinase/Resolvase1e-0655.5
NC_004668:2198027:2204960220496022065731614Enterococcus faecalis V583, complete genomesite-specific recombinase, resolvase family, putative1e-0655.5
NC_015660:3174424:3178571317857131800281458Geobacillus thermoglucosidasius C56-YS93 chromosome, completeResolvase domain-containing protein1e-0655.1
NC_016048:2678205:2695235269523526969171683Oscillibacter valericigenes Sjm18-20, complete genomeputative site-specific recombinase2e-0654.7
NC_010003:449192:4623954623954639631569Petrotoga mobilis SJ95, complete genomeResolvase domain2e-0654.7
NC_015275:3407358:3433172343317234347761605Clostridium lentocellum DSM 5427 chromosome, complete genomeRecombinase2e-0654.3
NC_013768:1802313:1812474181247418140751602Listeria monocytogenes 08-5923, complete genomesite-specific DNA recombinase2e-0654.3
NC_013766:1835964:1845743184574318473441602Listeria monocytogenes 08-5578 chromosome, complete genomesite-specific DNA recombinase2e-0654.3
NC_012796:4075583:412081941208194121520702Desulfovibrio magneticus RS-1, complete genomehypothetical protein3e-0653.9
NC_010981:314745:3593593593593606571299Wolbachia pipientis, complete genomesite-specific recombinase, resolvase family4e-0653.5
NC_014151:1373937:1381285138128513826881404Cellulomonas flavigena DSM 20109 chromosome, complete genomeResolvase domain protein5e-0653.1
NC_014376:3732547:3763388376338837650641677Clostridium saccharolyticum WM1 chromosome, complete genomeRecombinase8e-0652.4