Pre_GI Gene

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Host: NC_015975 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_015975:558523 Lactobacillus ruminis ATCC 27782 chromosome, complete genome

Host Lineage: Lactobacillus ruminis; Lactobacillus; Lactobacillaceae; Lactobacillales; Firmicutes; Bacteria

General Information: This organism was isolated from bovine rumen. They are commonly found in the oral, vaginal, and intestinal regions of many animals. They are important industrial microbes that contribute to the production of cheese, yogurt, and other products such as fermented milks, all stemming from the production of lactic acid, which inhibits the growth of other organisms as well as lowering the pH of the food product. Industrial production requires the use of starter cultures, which are carefully cultivated, created, and maintained, which produce specific end products during fermentation that impart flavor to the final product, as well as contributing important metabolic reactions, such as the breakdown of milk proteins during cheese production. The end product of fermentation, lactic acid, is also being used as a starter molecule for complex organic molecule syntheses.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
558523559062540hypothetical proteinBLASTP
5591505605231374tRNA Uracil-5- -methyltransferaseQuickGO ontologyBLASTP
5608265623941569RecombinaseResolvaseQuickGO ontologyBLASTP
562395562811417putative recombinaseQuickGO ontologyBLASTP
5628165638201005integraseQuickGO ontologyBLASTP
563932564261330hypothetical proteinBLASTP
564291564776486hypothetical proteinBLASTP
568366568560195hypothetical proteinBLASTP
570737571618882hypothetical protein
571650572099450hypothetical protein
572675573412738IstB ATP binding domain-containing proteinQuickGO ontologyBLASTP
5734145746371224integraseQuickGO ontologyBLASTP
575305575682378hypothetical proteinBLASTP
575675576241567hypothetical proteinBLASTP
576229576459231hypothetical proteinBLASTP
5766125787622151SNF2 family DNARNA helicaseQuickGO ontologyBLASTP
579198580103906Quinolinate synthetase AQuickGO ontologyBLASTP
5801985814331236L-aspartate oxidaseQuickGO ontologyBLASTP
581474582328855Nicotinate-nucleotide diphosphorylaseQuickGO ontologyBLASTP
582385582939555putative transcriptional regulatorQuickGO ontologyBLASTP
5851655862321068putative methylaseQuickGO ontologyBLASTP