Pre_GI: BLASTP Hits

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Query: NC_004337:367687:376390 Shigella flexneri 2a str. 301, complete genome

Start: 376390, End: 378543, Length: 2154

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated in 1984 from a patient in Beijing, China. It is similar to pathogenic Escherichia coli except for the more numerous insertion sequences and contains a virulence plasmid (pCP301). Causes enteric disease. Shigella This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017328:385552:3942543942543966772424Shigella flexneri 2002017 chromosome, complete genomehypothetical protein01481
NC_004741:366822:3755243755243776772154Shigella flexneri 2a str. 2457T, complete genomehypothetical protein01481
NC_008258:401786:4104884104884126412154Shigella flexneri 5 str. 8401, complete genomehypothetical protein01473
NC_011294:2053991:2089859208985920920272169Salmonella enterica subsp. enterica serovar Enteritidis strhypothetical protein0830
NC_011274:2044000:2080992208099220831602169Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91hypothetical protein0830
NC_011205:2180598:2216872221687222190402169Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853tetratricopeptide repeat protein0830
NC_016831:947281:9514279514279535952169Salmonella enterica subsp. enterica serovar Gallinarum/pullorumhypothetical protein0828
NC_010102:997417:99920499920410013722169Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein0827
NC_011149:1987291:2030281203028120324492169Salmonella enterica subsp. enterica serovar Agona str. SL483,tetratricopeptide repeat protein0821
NC_009381:1258396:1272647127264712748092163Yersinia pestis Pestoides F chromosome, complete genomehypothetical protein0767
NC_005810:2043730:2043730204373020458922163Yersinia pestis biovar Microtus str. 91001, complete genomehypothetical protein0767
NC_008149:1669921:1669921166992116720832163Yersinia pestis Nepal516, complete genomehypothetical protein0764
NC_003143:2258636:2258636225863622607982163Yersinia pestis CO92, complete genomehypothetical protein0764
NC_008150:1543635:1543635154363515457972163Yersinia pestis Antiqua, complete genomehypothetical protein0764
NC_004088:2541033:2556053255605325582152163Yersinia pestis KIM, complete genomehypothetical protein0764
NC_014029:2335021:2350041235004123522032163Yersinia pestis Z176003 chromosome, complete genomehypothetical protein0764
NC_017154:2258228:2258228225822822603902163Yersinia pestis D106004 chromosome, complete genomehypothetical protein0764
NC_017265:2263347:2277011227701122791732163Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,hypothetical protein0764
NC_009708:2392640:2407661240766124098232163Yersinia pseudotuberculosis IP 31758 chromosome, complete genomehypothetical protein0764
NC_010465:2428620:2443628244362824457902163Yersinia pseudotuberculosis YPIII, complete genomeSel1 domain protein repeat-containing protein0764
NC_006155:2334122:2334122233412223362842163Yersinia pseudotuberculosis IP 32953, complete genomehypothetical protein0763
NC_010634:2252329:2252329225232922544912163Yersinia pseudotuberculosis PB1/+, complete genomeSel1 domain-containing protein0763
NC_003454:618290:6271266271266281421017Fusobacterium nucleatum subsp. nucleatum ATCC 25586, completeHypothetical exported 24-amino acid repeat protein2e-25118
NC_003454:618290:626377626377627114738Fusobacterium nucleatum subsp. nucleatum ATCC 25586, completeHypothetical exported 24-amino acid repeat protein3e-1894
NC_010337:803748:842510842510843208699Heliobacterium modesticaldum Ice1, complete genomehypothetical protein5e-1893.6
NC_013517:483531:4986144986145002181605Sebaldella termitidis ATCC 33386, complete genomeMORN variant repeat protein4e-1687
NC_010830:1069666:1084709108470910867632055Candidatus Amoebophilus asiaticus 5a2, complete genomehypothetical protein2e-1584.7
NC_013355:1332263:133712113371211338068948Zymomonas mobilis subsp. mobilis NCIB 11163, complete genomeSel1 domain protein repeat-containing protein6e-1583.2
NC_008322:3758500:3775392377539237777012310Shewanella sp. MR-7, complete genomehypothetical protein1e-1482.4
NC_006138:225832:2412732412732423401068Desulfotalea psychrophila LSv54, complete genomesimilar to TPR repeat proteins1e-1482
NC_010830:1543548:1551922155192215561304209Candidatus Amoebophilus asiaticus 5a2, complete genomehypothetical protein3e-1480.9
NC_015731:313676:315414315414316016603Nitrosomonas sp. Is79A3 chromosome, complete genomeSel1 domain-containing protein8e-1479.7
NC_010830:384812:3939843939844012257242Candidatus Amoebophilus asiaticus 5a2, complete genomehypothetical protein8e-1479.7
NC_003454:618290:629126629126629818693Fusobacterium nucleatum subsp. nucleatum ATCC 25586, completeHypothetical exported 24-amino acid repeat protein6e-1479.7
NC_016791:3953972:3986298398629839893123015Clostridium sp. BNL1100 chromosome, complete genomehypothetical protein6e-1479.7
NC_010830:1069666:1080998108099810833672370Candidatus Amoebophilus asiaticus 5a2, complete genomehypothetical protein9e-1479.3
NC_021184:3533500:3553185355318535558092625Desulfotomaculum gibsoniae DSM 7213, complete genomeTPR repeat-containing protein2e-1378.6
NC_003454:618290:625615625615626349735Fusobacterium nucleatum subsp. nucleatum ATCC 25586, completeHypothetical exported 24-amino acid repeat protein3e-1377.4
NC_014394:1594071:1605189160518916064091221Gallionella capsiferriformans ES-2 chromosome, complete genomeSel1 domain-containing protein repeat-containing protein5e-1377
NC_010830:1124500:1137798113779811422794482Candidatus Amoebophilus asiaticus 5a2, complete genomehypothetical protein5e-1377
NC_019903:1345585:1386162138616213890682907Desulfitobacterium dichloroeliminans LMG P-21439 chromosome,hypothetical protein6e-1376.6
NC_015581:1731120:1737854173785417389481095Thioalkalimicrobium cyclicum ALM1 chromosome, complete genomeSel1 domain-containing protein repeat-containing protein7e-1376.3
NC_013355:1332263:1332263133226313340621800Zymomonas mobilis subsp. mobilis NCIB 11163, complete genomeSel1 domain protein repeat-containing protein1e-1275.5
NC_018867:1357540:1364197136419713668752679Dehalobacter sp. CF chromosome, complete genomehypothetical protein1e-1275.5
NC_018866:1279000:1285657128565712883352679Dehalobacter sp. DCA chromosome, complete genomehypothetical protein1e-1275.5
NC_016048:4163225:4203176420317642059772802Oscillibacter valericigenes Sjm18-20, complete genomehypothetical protein1e-1275.5
NC_013740:1178370:1187448118744811893971950Acidaminococcus fermentans DSM 20731, complete genomeSel1 domain protein repeat-containing protein2e-1274.7
NC_007614:109000:1097271097271111961470Nitrosospira multiformis ATCC 25196 chromosome 1, completeSel1-like repeat3e-1274.3
NC_009706:3882500:3911122391112239139202799Clostridium kluyveri DSM 555 chromosome, complete genomehypothetical protein4e-1273.9
NC_011837:3814000:3842625384262538454232799Clostridium kluyveri NBRC 12016, complete genomehypothetical protein4e-1273.9
NC_020908:2571943:259270125927012593405705Octadecabacter arcticus 238, complete genome1e-1172.4
NC_003454:618290:628451628451629020570Fusobacterium nucleatum subsp. nucleatum ATCC 25586, completeHypothetical exported 24-amino acid repeat protein1e-1172.4
NC_010830:1637598:1645106164510616473012196Candidatus Amoebophilus asiaticus 5a2, complete genomehypothetical protein2e-1172
NC_004431:1211000:1219723121972312208591137Escherichia coli CFT073, complete genomehypothetical protein3e-1171.2
NC_005085:24623:484624846249127666Chromobacterium violaceum ATCC 12472, complete genomehypothetical protein3e-1171.2
NC_016609:5763357:5770469577046957715811113Niastella koreensis GR20-10 chromosome, complete genomeSel1 domain-containing protein repeat-containing protein3e-1171.2
NC_010830:1069666:1078070107807010809552886Candidatus Amoebophilus asiaticus 5a2, complete genomehypothetical protein2e-1171.2
NC_007946:1119000:1127725112772511288611137Escherichia coli UTI89, complete genomehypothetical protein2e-1171.2
NC_020418:2084937:209256220925622093266705Morganella morganii subsp. morganii KT, complete genomehypothetical protein3e-1170.9
NC_007512:944941:9620849620849635321449Pelodictyon luteolum DSM 273, complete genomeSel1-like repeat3e-1170.9
NC_010830:475248:507427507427508383957Candidatus Amoebophilus asiaticus 5a2, complete genome5e-1170.1
NC_009445:7324977:7339392733939273413441953Bradyrhizobium sp. ORS 278 chromosome, complete genomehypothetical protein6e-1170.1
NC_017059:1:587658766664789Rhodospirillum photometricum DSM 122, complete genomeTPR repeat SEL1 subfamily8e-1169.7
NC_010337:616304:6163046163046180881785Heliobacterium modesticaldum Ice1, complete genomehypothetical protein2e-1068.6
NC_014033:395000:4039554039554072753321Prevotella ruminicola 23 chromosome, complete genomehypothetical protein2e-1068.2
NC_010830:475248:5044185044185074263009Candidatus Amoebophilus asiaticus 5a2, complete genomehypothetical protein2e-1068.2
NC_016048:1625812:1638521163852116414302910Oscillibacter valericigenes Sjm18-20, complete genomehypothetical protein3e-1067.4
NC_013416:1526920:153030415303041531014711Aggregatibacter actinomycetemcomitans D11S-1, complete genomeSel1 domain protein repeat-containing protein4e-1067.4
NC_016513:1859767:186545518654551866174720Aggregatibacter actinomycetemcomitans ANH9381 chromosome, completeSel1 domain-containing protein repeat-containing protein4e-1067.4
NC_009997:2967521:2967521296752129692211701Shewanella baltica OS195, complete genomehypothetical protein5e-1067
NC_016901:2916988:2916988291698829186881701Shewanella baltica OS678 chromosome, complete genomehypothetical protein5e-1067
NC_014394:1989418:199750619975061998492987Gallionella capsiferriformans ES-2 chromosome, complete genomeSel1 domain-containing protein repeat-containing protein4e-1067
NC_020908:2571943:259082325908232591314492Octadecabacter arcticus 238, complete genome1e-0965.9
NC_010830:1543548:1556591155659115582491659Candidatus Amoebophilus asiaticus 5a2, complete genomehypothetical protein2e-0965.5
NC_003454:618290:622524622524623183660Fusobacterium nucleatum subsp. nucleatum ATCC 25586, completeHypothetical exported 24-amino acid repeat protein2e-0965.1
NC_018870:757416:7789717789717807461776Thermacetogenium phaeum DSM 12270 chromosome, complete genomeserine threonine protein phosphatase 52e-0964.7
NC_011146:1293202:130488213048821305700819Geobacter bemidjiensis Bem, complete genomeSel1 domain protein repeat-containing protein3e-0964.3
NC_015572:2186394:2191242219124221929961755Methylomonas methanica MC09 chromosome, complete genomeSel1 domain-containing protein repeat-containing protein5e-0963.9
NC_004757:267165:2743522743522774503099Nitrosomonas europaea ATCC 19718, complete genomehypothetical protein4e-0963.9
NC_020908:1472981:148604014860401486744705Octadecabacter arcticus 238, complete genomesel-1-like repeats-containing protein4e-0963.9
NC_014828:2657623:2659251265925126633844134Ethanoligenens harbinense YUAN-3 chromosome, complete genomeSel1 domain protein repeat-containing protein6e-0963.5
NC_015572:1:2116221162237652604Methylomonas methanica MC09 chromosome, complete genomeSel1 domain-containing protein repeat-containing protein7e-0963.2
NC_008570:1986466:1996643199664319980311389Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genomehypothetical protein9e-0962.8
NC_013959:1195249:120238612023861203339954Sideroxydans lithotrophicus ES-1 chromosome, complete genomeSel1 domain protein repeat-containing protein1e-0862.8
NC_015275:2712991:2728346272834627293981053Clostridium lentocellum DSM 5427 chromosome, complete genomeSel1 domain protein repeat-containing protein1e-0862.4
NC_010830:1543548:154751615475161548430915Candidatus Amoebophilus asiaticus 5a2, complete genomehypothetical protein1e-0862
NC_014914:1327245:134485313448531345323471Taylorella equigenitalis MCE9 chromosome, complete genomehypothetical protein2e-0861.6
NC_002939:2617037:262864526286452629286642Geobacter sulfurreducens PCA, complete genomehypothetical protein5e-0860.5
NC_017171:1331794:133179413317941332264471Acinetobacter baumannii MDR-ZJ06 chromosome, complete genomeTPR repeat-containing SEL1 subfamily protein5e-0860.1
NC_015873:2197412:219972421997242200527804Megasphaera elsdenii DSM 20460, complete genomesel1 repeat protein6e-0860.1
NC_013421:1173051:1178190117819011795421353Pectobacterium wasabiae WPP163, complete genomeSel1 domain protein repeat-containing protein7e-0859.7
NC_020063:1194000:1200666120066612017361071Enterobacteriaceae bacterium strain FGI 57, complete genomeTPR repeat-containing protein8e-0859.7
NC_000921:1147394:116131911613191162089771Helicobacter pylori J99, complete genomehypothetical protein8e-0859.7
NC_010830:1124500:1130165113016511357985634Candidatus Amoebophilus asiaticus 5a2, complete genomehypothetical protein1e-0759.3
NC_003454:618290:625088625088625594507Fusobacterium nucleatum subsp. nucleatum ATCC 25586, completeHypothetical exported 24-amino acid repeat protein1e-0758.9
NC_009256:3540531:354177935417793542633855Burkholderia vietnamiensis G4 chromosome 1, complete sequenceSel1 domain-containing protein2e-0758.5
NC_013855:196778:204992204992205693702Azospirillum sp. B510 plasmid pAB510a, complete sequencehypothetical protein2e-0758.2
NC_010830:923266:9301679301679342674101Candidatus Amoebophilus asiaticus 5a2, complete genomehypothetical protein3e-0757.8
NC_008322:3758500:3773508377350837752411734Shewanella sp. MR-7, complete genomeMORN variant repeat protein4e-0757.4
NC_008321:977500:9776419776419793741734Shewanella sp. MR-4, complete genomeMORN variant repeat protein5e-0757
NC_012791:651480:6573146573146583421029Variovorax paradoxus S110 chromosome 1, complete genomehypothetical protein5e-0757
NC_010322:4623867:4637043463704346381401098Pseudomonas putida GB-1 chromosome, complete genomeSel1 domain-containing protein5e-0757
NC_014752:617987:633691633691634428738Neisseria lactamica ST-640, complete genomeperiplasmic protein6e-0756.6
NC_008347:3034100:3048523304852330497341212Maricaulis maris MCS10, complete genomeSel1 domain protein repeat-containing protein7e-0756.6
NC_013440:1436784:1444937144493714464001464Haliangium ochraceum DSM 14365, complete genomeSel1 domain protein repeat-containing protein2e-0655.5
NC_016002:1048420:106260910626091063160552Pseudogulbenkiania sp. NH8B, complete genomeSel1 repeat-containing protein2e-0655.1
NC_009663:2500186:250582425058242506462639Sulfurovum sp. NBC37-1, complete genomehypothetical protein2e-0654.7
NC_003454:618290:621998621998622420423Fusobacterium nucleatum subsp. nucleatum ATCC 25586, completeHypothetical exported 24-amino acid repeat protein5e-0653.9
NC_007907:5185510:5266735526673552684081674Desulfitobacterium hafniense Y51, complete genomehypothetical protein5e-0653.5
NC_011149:1110642:112113511211351122100966Salmonella enterica subsp. enterica serovar Agona str. SL483,Sel1 domain protein repeat-containing protein8e-0653.1
NC_015731:313676:317232317232317564333Nitrosomonas sp. Is79A3 chromosome, complete genomeSel1 domain-containing protein8e-0653.1
NC_009615:363285:379106379106379576471Parabacteroides distasonis ATCC 8503 chromosome, complete genomehypothetical protein8e-0652.8
NC_015276:3321277:333708633370863337595510Marinomonas mediterranea MMB-1 chromosome, complete genomeSel1 domain protein repeat-containing protein9e-0652.8
NC_010830:1171781:1177610117761011814553846Candidatus Amoebophilus asiaticus 5a2, complete genomehypothetical protein1e-0552.8