Pre_GI Gene

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Host: NC_010322 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_010322:4623867 Pseudomonas putida GB-1 chromosome, complete genome

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Pseudomonas putida strain GB-1, a fresh water, Gram-negative gamma-proteobacterium, is a genetically tractable, robust manganese (Mn) oxidizer, and as such, is an ideal model for unraveling the catalytic mechanism for, and the molecular regulation of Mn(IV) oxide production and its eventual accumulation on the cell surface at the onset of stationary phase. Since its isolation from Green Bay nearly 20 years ago by Ken Nealson’s group (then at the Center for Great Lakes Studies, Univ. Wisconsin-Milwaukee, USA), it has been the non spore-forming, model organism (along with the closely-related strain MnB1) for molecular genetic studies of Mn(II) oxidization, protein transport and biofilm formation and for biochemical studies on protein purification and Mn(III)-pyoverdine binding. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
462386746255041638malatequinone oxidoreductaseQuickGO ontologyBLASTP
46258324626023192hypothetical proteinBLASTP
46262124626829618lysine exporter protein LysEYggAQuickGO ontologyBLASTP
462693246281401209hypothetical proteinBLASTP
462815146300641914hypothetical proteinBLASTP
46300734630933861SH3 type 3 domain-containing proteinQuickGO ontologyBLASTP
463163746329801344integrase family proteinQuickGO ontologyBLASTP
46331314633298168phage transcriptional regulator AlpAQuickGO ontologyBLASTP
46346494635275627hypothetical proteinBLASTP
46356734636308636hypothetical proteinBLASTP
463704346381401098Sel1 domain-containing proteinQuickGO ontologyBLASTP
46383684639081714hypothetical protein
463947146411951725SMC domain-containing proteinQuickGO ontologyBLASTP
464119846428351638UvrDREP helicaseQuickGO ontologyBLASTP
46429684643690723hypothetical protein
464385246457591908hypothetical proteinBLASTP
464639646482401845hypothetical proteinBLASTP
46485984648924327hypothetical proteinBLASTP
46506584651335678hypothetical proteinBLASTP
46514374651676240hypothetical proteinBLASTP
46529074653275369hypothetical protein
465352346548991377relaxasemobilization nuclease family proteinQuickGO ontologyBLASTP
46552134655494282hypothetical proteinBLASTP
465579146599514161hypothetical proteinBLASTP
46612574661616360hypothetical proteinBLASTP
46624954663325831hypothetical proteinBLASTP
46634024663833432hypothetical proteinBLASTP
46644384664818381hypothetical proteinBLASTP
46653504665814465hypothetical proteinBLASTP
46667264667013288XRE family transcriptional regulatorQuickGO ontologyBLASTP
46676234668270648cobyrinic acid ac-diamide synthaseQuickGO ontologyBLASTP
46705844670829246XRE family transcriptional regulatorQuickGO ontologyBLASTP
46711444671584441hypothetical protein
46718464672559714hypothetical protein