Pre_GI: BLASTP Hits

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Query: NC_004337:1065609:1083600 Shigella flexneri 2a str. 301, complete genome

Start: 1083600, End: 1085081, Length: 1482

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated in 1984 from a patient in Beijing, China. It is similar to pathogenic Escherichia coli except for the more numerous insertion sequences and contains a virulence plasmid (pCP301). Causes enteric disease. Shigella This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_000913:1087062:1105578110557811069991422Escherichia coli K12, complete genomepredicted hydrolase0971
NC_016863:1165232:1190944119094411924281485Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative phospholipase0818
NC_006905:1186895:1213442121344212150281587Salmonella enterica subsp. enterica serovar Choleraesuis strputative phospholipase0813
NC_013716:1178383:1203746120374612051671422Citrobacter rodentium ICC168, complete genomeputative phospholipase0800
NC_014306:1810548:1810548181054818120201473Erwinia billingiae Eb661, complete genomePutative phospholipase YmdC0657
NC_009778:2227627:2233145223314522344491305Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein0636
NC_013960:1778411:1788112178811217896741563Nitrosococcus halophilus Nc4 chromosome, complete genomephospholipase D/Transphosphatidylase2e-131469
NC_010611:3381500:3396901339690133985261626Acinetobacter baumannii ACICU, complete genomePhosphatidylserine/phosphatidylglycerophosphate/ cardioli pin synthase8e-96351
NC_010410:513298:5141085141085157391632Acinetobacter baumannii AYE, complete genomeputative phospholipase D protein9e-96351
NC_020541:2694836:2715963271596327175071545Rhodanobacter sp. 2APBS1, complete genomephosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase5e-88325
NC_010552:752007:7739707739707755201551Burkholderia ambifaria MC40-6 chromosome 2, complete sequencephospholipase D/Transphosphatidylase4e-86319
NC_014965:2200974:2220927222092722224021476Vibrio vulnificus MO6-24/O chromosome I, complete sequencecardiolipin synthetase2e-81303
NC_004459:3243987:3269975326997532714801506Vibrio vulnificus CMCP6 chromosome I, complete sequencePhopholipase D-family protein8e-80298
NC_013889:1202385:1218087121808712196491563Thioalkalivibrio sp. K90mix chromosome, complete genomephospholipase D/Transphosphatidylase1e-79297
NC_015723:2550000:2566874256687425684571584Cupriavidus necator N-1 chromosome 2, complete sequencecardiolipin synthetase2e-78293
NC_017986:2548720:2548720254872025502551536Pseudomonas putida ND6 chromosome, complete genomephospholipase D/transphosphatidylase7e-72271
NC_008789:350650:3916173916173931761560Halorhodospira halophila SL1, complete genomephospholipase D/Transphosphatidylase7e-71268
NC_013446:1173377:1176384117638411781321749Comamonas testosteroni CNB-2, complete genomephospholipase D/Transphosphatidylase3e-61236
NC_008782:3361850:3375744337574433774741731Acidovorax sp. JS42, complete genomephospholipase D/Transphosphatidylase3e-58226
NC_015563:1595500:1599127159912716009411815Delftia sp. Cs1-4 chromosome, complete genomephospholipase D/transphosphatidylase9e-57221
NC_010002:5752363:5766414576641457682281815Delftia acidovorans SPH-1, complete genomephospholipase D/Transphosphatidylase1e-56221
NC_015977:3215770:3252347325234732537801434Roseburia hominis A2-183 chromosome, complete genomehypothetical protein1e-20101
NC_015977:2966971:2974736297473629761691434Roseburia hominis A2-183 chromosome, complete genomehypothetical protein1e-20101
NC_017030:3668146:3683855368385536854111557Corallococcus coralloides DSM 2259 chromosome, complete genomecardiolipin synthase2e-1997.8
NC_021171:4674086:4688431468843146896391209Bacillus sp. 1NLA3E, complete genomecardiolipin synthetase domain-containing protein2e-1997.4
NC_014393:3494863:3517034351703435184791446Clostridium cellulovorans 743B chromosome, complete genomephospholipase D/Transphosphatidylase1e-1791.3
NC_007969:2885249:2916935291693529183741440Psychrobacter cryohalolentis K5, complete genomephospholipase D/Transphosphatidylase5e-1789.7
NC_016027:1851737:1866178186617818676081431Gluconacetobacter xylinus NBRC 3288, complete genomephospholipase D1e-1688.2
NC_017047:3907854:3934403393440339356501248Rahnella aquatilis HX2 chromosome, complete genomecardiolipin synthase 23e-1687
NC_015061:3840463:3866989386698938682361248Rahnella sp. Y9602 chromosome, complete genomephospholipase D/Transphosphatidylase4e-1686.7
NC_010943:9294:1315713157146171461Stenotrophomonas maltophilia K279a, complete genomeputative cardiolipin synthetase4e-1686.7
NC_004557:2777291:2487248739231437Clostridium tetani E88, complete genomeputative cardiolipin synthetase 26e-1685.9
NC_004557:1:2487248739231437Clostridium tetani E88, complete genomeputative cardiolipin synthetase 26e-1685.9
NC_017190:3879148:3896550389655038980431494Bacillus amyloliquefaciens LL3 chromosome, complete genomecardiolipin synthetase9e-1685.5
NC_017190:2002718:2009583200958320110761494Bacillus amyloliquefaciens LL3 chromosome, complete genomecardiolipin synthetase9e-1685.5
NC_014551:3864127:3881529388152938830221494Bacillus amyloliquefaciens DSM 7, complete genomecardiolipin synthetase9e-1685.5
NC_014551:2057971:2064821206482120663141494Bacillus amyloliquefaciens DSM 7, complete genomecardiolipin synthetase9e-1685.5
NC_002570:3911153:3925822392582239270181197Bacillus halodurans C-125, complete genomecardiolipin synthetase1e-1585.1
NC_011071:10842:1342113421148811461Stenotrophomonas maltophilia R551-3, complete genomephospholipase D/Transphosphatidylase1e-1584.7
NC_015733:5909821:5909821590982159112601440Pseudomonas putida S16 chromosome, complete genomecardiolipin synthetase2e-1584.3
NC_003888:7866148:7870734787073478719211188Streptomyces coelicolor A3(2), complete genomephospholipase2e-1584
NC_010571:637398:6747776747776763211545Opitutus terrae PB90-1, complete genomecardiolipin synthetase3e-1583.6
NC_015723:1347946:1358735135873513600301296Cupriavidus necator N-1 chromosome 2, complete sequencecardiolipin synthase Cls6e-1582.8
NC_016630:864601:8937008937008951811482Filifactor alocis ATCC 35896 chromosome, complete genomecardiolipin synthase5e-1582.8
NC_004088:2227278:2240946224094622424271482Yersinia pestis KIM, complete genomecardiolipin synthetase7e-1582.4
NC_010322:6037566:6042477604247760439161440Pseudomonas putida GB-1 chromosome, complete genomecardiolipin synthetase7e-1582.4
NC_008149:1842500:1873334187333418747941461Yersinia pestis Nepal516, complete genomecardiolipin synthetase7e-1582.4
NC_010159:2252380:2253916225391622553761461Yersinia pestis Angola, complete genomecardiolipin synthetase7e-1582.4
NC_008150:1705152:1736673173667317381331461Yersinia pestis Antiqua, complete genomecardiolipin synthetase7e-1582.4
NC_009381:1064227:1070699107069910721591461Yersinia pestis Pestoides F chromosome, complete genomecardiolipin synthetase7e-1582.4
NC_009708:2245586:2252731225273122541911461Yersinia pseudotuberculosis IP 31758 chromosome, complete genomecardiolipin synthetase7e-1582.4
NC_014029:2138000:2147333214733321487931461Yersinia pestis Z176003 chromosome, complete genomecardiolipin synthetase7e-1582.4
NC_017160:2054289:2074925207492520763851461Yersinia pestis D182038 chromosome, complete genomecardiolipin synthetase7e-1582.4
NC_017168:3290380:3296223329622332976831461Yersinia pestis A1122 chromosome, complete genomecardiolipin synthetase7e-1582.4
NC_017265:1765399:1779847177984717813071461Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,cardiolipin synthase 17e-1582.4
NC_007759:512477:5147015147015161791479Syntrophus aciditrophicus SB, complete genomecardiolipin synthetase1e-1482
NC_010465:2282874:2290018229001822914781461Yersinia pseudotuberculosis YPIII, complete genomephospholipase D/Transphosphatidylase8e-1582
NC_007712:2287053:2287053228705322885131461Sodalis glossinidius str. 'morsitans', complete genomecardiolipin synthase1e-1481.6
NC_020304:1097478:1099175109917511003381164Desulfocapsa sulfexigens DSM 10523, complete genomephosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase1e-1481.6
NC_008262:101731:1053771053771067891413Clostridium perfringens SM101, complete genomecardiolipin synthetase2e-1481.3
NC_013132:893849:9110869110869125641479Chitinophaga pinensis DSM 2588, complete genomephospholipase D/Transphosphatidylase2e-1481.3
NC_003366:64908:9206292062935041443Clostridium perfringens str. 13, complete genomeprobable cardiolipin synthase2e-1481.3
NC_014640:4951076:4964407496440749659001494Achromobacter xylosoxidans A8 chromosome, complete genomephospholipase D2e-1480.5
NC_014910:3727887:3758615375861537600181404Alicycliphilus denitrificans BC chromosome, complete genomephospholipase d/transphosphatidylase4e-1480.1
NC_014643:1251847:1278592127859212800701479Rothia dentocariosa ATCC 17931 chromosome, complete genomecardiolipin synthetase6e-1479.3
NC_007645:2181739:2183363218336321845321170Hahella chejuensis KCTC 2396, complete genomePhosphatidylserine/phosphatidylglycerophosphate/ c ardiolipin synthases and related enzyme9e-1478.6
NC_012918:1660477:1663006166300616641931188Geobacter sp. M21 chromosome, complete genomephospholipase D/transphosphatidylase2e-1377.8
NC_016513:1529691:1532716153271615341731458Aggregatibacter actinomycetemcomitans ANH9381 chromosome, completecardiolipin synthetase7e-1375.9
NC_016012:135500:1535261535261549921467Candidatus Arthromitus sp. SFB-rat-Yit, complete genomecardiolipin synthetase9e-1375.5
NC_007384:2007467:2027644202764420291041461Shigella sonnei Ss046, complete genomecardiolipin synthase, a major membrane phospholipid; novobiocin sensitivity8e-1375.5
NC_009801:1392696:1396047139604713975071461Escherichia coli E24377A, complete genomecardiolipin synthetase8e-1375.5
NC_013364:1596278:1600564160056416020241461Escherichia coli O111:H- str. 11128, complete genomecardiolipin synthase 18e-1375.5
NC_002488:1157684:1157684115768411590871404Xylella fastidiosa 9a5c, complete genomecardiolipin synthase2e-1274.3
NC_014622:5251000:5270699527069952722101512Paenibacillus polymyxa SC2 chromosome, complete genomephospholipase d/transphosphatidylase3e-1273.9
NC_014011:962474:9812899812899828751587Aminobacterium colombiense DSM 12261 chromosome, complete genomephospholipase D/Transphosphatidylase3e-1273.6
NC_014623:8763551:8783131878313187843961266Stigmatella aurantiaca DW4/3-1 chromosome, complete genomesimialr to cardiolipin synthetase domain-containing protein1e-1172
NC_003272:5040500:5059332505933250607741443Nostoc sp. PCC 7120, complete genomecardiolipin synthetase1e-1172
NC_014550:2835696:2857039285703928585111473Arthrobacter arilaitensis Re117, complete genomeputative cardiolipin synthase2e-1171.2
NC_012779:1629731:1634011163401116354711461Edwardsiella ictaluri 93-146, complete genomecardiolipin synthetase2e-1170.9
NC_017294:758992:7589927589927604401449Candidatus Arthromitus sp. SFB-mouse-Yit, complete genomeputative cardiolipin synthase4e-1169.7
NC_014507:1373325:1385037138503713865151479Methanoplanus petrolearius DSM 11571 chromosome, complete genomephospholipase D/transphosphatidylase8e-1168.9
NC_013517:2437574:2457769245776924592651497Sebaldella termitidis ATCC 33386, complete genomephospholipase D/Transphosphatidylase1e-1068.2
NC_015913:178451:1964541964541979201467Candidatus Arthromitus sp. SFB-mouse-Japan, complete genomecardiolipin synthase4e-1066.6
NC_011206:1379068:1390424139042413917611338Acidithiobacillus ferrooxidans ATCC 53993, complete genomephospholipase D/Transphosphatidylase7e-1065.9
NC_011761:1499500:1504835150483515062111377Acidithiobacillus ferrooxidans ATCC 23270 chromosome, completephospholipase D8e-1065.5
NC_008048:389645:3983633983633997661404Sphingopyxis alaskensis RB2256, complete genomephospholipase D/Transphosphatidylase1e-0965.5
NC_015942:2060349:2064507206450720658441338Acidithiobacillus ferrivorans SS3 chromosome, complete genomephospholipase D/transphosphatidylase1e-0965.5
NC_002927:118982:1189821189821201931212Bordetella bronchiseptica RB50, complete genomeputative phospholipase2e-0964.7
NC_002928:123126:1231261231261243881263Bordetella parapertussis 12822, complete genomeputative phospholipase1e-0964.7
NC_003366:461602:4662774662774678121536Clostridium perfringens str. 13, complete genomecardiolipin synthase3e-0963.9
NC_009092:1127000:1136261113626111380421782Shewanella loihica PV-4, complete genomephospholipase D/Transphosphatidylase2e-0861.2
NC_011146:3206000:3224504322450432256911188Geobacter bemidjiensis Bem, complete genomephospholipase D/Transphosphatidylase7e-0858.9
NC_013173:1259898:1294115129411512953921278Desulfomicrobium baculatum DSM 4028, complete genomephospholipase D/Transphosphatidylase2e-0757.8