Pre_GI: BLASTP Hits

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Query: NC_003155:6444500:6456160 Streptomyces avermitilis MA-4680, complete genome

Start: 6456160, End: 6458436, Length: 2277

Host Lineage: Streptomyces avermitilis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This strain (ATCC 31267) was isolated and characterized in 1978 by R. Burg and colleagues from a soil sample collected in Shizuoka Prefecture, Japan. Antibiotic-producing bacterium. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This organism is a well known producer of the anti-parasitic agent avermectin which is widely used to rid livestock of worm and insect infestations and to protect large numbers of people from river blindness in sub-Saharan Africa.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013929:6526745:6536994653699465392552262Streptomyces scabiei 87.22 chromosome, complete genomeDNA-binding protein01325
NC_012796:2090000:2095549209554920977262178Desulfovibrio magneticus RS-1, complete genomehelicase RecD/TraA family protein0636
NC_012796:4075583:4125454412545441276252172Desulfovibrio magneticus RS-1, complete genomehelicase RecD/TraA family protein5e-178625
NC_008554:2308500:2328598232859823307962199Syntrophobacter fumaroxidans MPOB, complete genomehelicase, RecD/TraA family8e-169594
NC_010125:955863:9835099835099856952187Gluconacetobacter diazotrophicus PAl 5, complete genomeputative exodeoxyribonuclease V alpha chain6e-168591
NC_011365:1103927:1116217111621711184032187Gluconacetobacter diazotrophicus PAl 5 chromosome, complete genomehelicase, RecD/TraA family2e-167590
NC_010125:2884762:2896416289641628986022187Gluconacetobacter diazotrophicus PAl 5, complete genomeputative exodeoxyribonuclease1e-165584
NC_019697:1696000:1699454169945417017062253Chamaesiphon minutus PCC 6605, complete genomehelicase, putative, RecD/TraA family3e-164579
NC_011757:5693584:5700531570053157027832253Methylobacterium chloromethanicum CM4, complete genomehelicase, RecD/TraA family3e-162572
NC_010511:6067000:6080978608097860832122235Methylobacterium sp. 4-46 chromosome, complete genomerecombinase D2e-159563
NC_008609:1976403:2006218200621820084042187Pelobacter propionicus DSM 2379, complete genomehelicase, RecD/TraA family8e-159561
NC_010172:5447189:83038303105042202Methylobacterium extorquens PA1, complete genomehelicase, RecD/TraA family2e-154546
NC_011027:817311:8179938179938201942202Chlorobaculum parvum NCIB 8327, complete genomehelicase, RecD/TraA family1e-151537
NC_018664:239000:2433912433912456162226Clostridium acidurici 9a chromosome, complete genomeRecD/TraA family helicase RecD1e-148527
NC_010793:81219:8427684276864712196Orientia tsutsugamushi str. Ikeda, complete genomeexodeoxyribonuclease V alpha subunit3e-148526
NC_009012:2661795:2675408267540826776482241Clostridium thermocellum ATCC 27405, complete genomehelicase, RecD/TraA family9e-146518
NC_009633:760872:7692317692317714952265Alkaliphilus metalliredigens QYMF chromosome, complete genomerecombinase D7e-145514
NC_009922:2721343:2731601273160127338472247Alkaliphilus oremlandii OhILAs, complete genomehelicase, RecD/TraA family4e-144512
NC_020134:2772500:2784877278487727870902214Clostridium stercorarium subsp. stercorarium DSM 8532, completehelicase, RecD/TraA family4e-142505
NC_003366:2494907:2494907249490724971412235Clostridium perfringens str. 13, complete genomeexodeoxyribonuclease V alpha subunit1e-138494
NC_009495:183767:2021422021422043762235Clostridium botulinum A str. ATCC 3502 chromosome, complete genomehelicase, RecD/TraA family7e-139494
NC_008261:2708929:2708929270892927111632235Clostridium perfringens ATCC 13124, complete genomehelicase, RecD/TraA family3e-138492
NC_021182:4427468:4430951443095144331582208Clostridium pasteurianum BC1, complete genomehelicase, putative, RecD/TraA family3e-136486
NC_010723:485874:5040445040445062632220Clostridium botulinum E3 str. Alaska E43, complete genomehelicase, RecD/TraA family5e-136485
NC_017285:671546:6896006896006917982199Chlamydophila pneumoniae LPCoLN chromosome, complete genomeRecD/TraA family helicase9e-125448
NC_002179:667182:6852326852326874302199Chlamydophila pneumoniae AR39, complete genomeexodeoxyribonuclease V, alpha subunit9e-125448
NC_014365:2037506:2059009205900920611712163Desulfarculus baarsii DSM 2075 chromosome, complete genomehelicase, RecD/TraA family4e-121436
NC_014833:2988814:2995209299520929974672259Ruminococcus albus 7 chromosome, complete genomehelicase, RecD/TraA family4e-114412
NC_011772:4321117:4336135433613543384712337Bacillus cereus G9842, complete genomeputative helicase6e-103375
NC_010184:4219257:4234557423455742368932337Bacillus weihenstephanensis KBAB4, complete genomehelicase, RecD/TraA family2e-102374
NC_007530:4176462:4198106419810642004182313Bacillus anthracis str. 'Ames Ancestor', complete genomehelicase, putative2e-102374
NC_005957:4169610:4187265418726541896012337Bacillus thuringiensis serovar konkukian str. 97-27, completeexodeoxyribonuclease V, alpha subunit2e-102374
NC_017200:4191963:4208883420888342112192337Bacillus thuringiensis serovar finitimus YBT-020 chromosome,exodeoxyribonuclease V subunit alpha2e-102374
NC_011658:4171237:4188885418888541912212337Bacillus cereus AH187 chromosome, complete genomeputative helicase2e-102374
NC_011969:4065460:4084245408424540865812337Bacillus cereus Q1 chromosome, complete genomeexodeoxyribonuclease v, alpha subunit2e-102374
NC_014335:4113154:4129812412981241321482337Bacillus cereus biovar anthracis str. CI chromosome, completeRecD/TraA family helicase1e-102374
NC_015573:776209:7777177777177798042088Desulfotomaculum kuznetsovii DSM 6115 chromosome, complete genomehelicase, RecD/TraA family3e-84313
NC_006448:1568000:1576578157657815790822505Streptococcus thermophilus LMG 18311, complete genomeexodeoxyribonuclease V4e-82306
NC_006449:1572000:1580139158013915826432505Streptococcus thermophilus CNRZ1066, complete genomeexodeoxyribonuclease V1e-81305
NC_014365:2037506:2040817204081720430452229Desulfarculus baarsii DSM 2075 chromosome, complete genomeATP-dependent RecD/TraA family DNA helicase6e-80299
NC_010337:2339056:2339823233982323419762154Heliobacterium modesticaldum Ice1, complete genomeexodeoxyribonuclease V, alpha chain, RecD6e-63242
NC_017187:1305805:1319745131974513220722328Arcobacter butzleri ED-1, complete genomeexodeoxyribonuclease V subunit alpha3e-58227
NC_017955:2494640:2540042254004225419881947Modestobacter marinus, complete genomeATP-dependent exoDNAse subunit alpha/helicase superfamily I protein1e-57224
NC_012925:191501:2111252111252136142490Streptococcus suis P1/7, complete genomehypothetical protein7e-51202
NC_014394:2577949:2590285259028525926032319Gallionella capsiferriformans ES-2 chromosome, complete genomeAAA ATPase9e-39162
NC_008577:3485878:3495433349543334975982166Shewanella sp. ANA-3 chromosome 1, complete sequenceAAA ATPase8e-36152
NC_010172:798923:808552808552809130579Methylobacterium extorquens PA1, complete genomehelicase, RecD/TraA family1e-32142
NC_015725:926824:9456689456689479382271Mycoplasma bovis Hubei-1 chromosome, complete genomeexodeoxyribonuclease V subunit alpha6e-32139
NC_011663:674069:6824066824066845592154Shewanella baltica OS223 chromosome, complete genomeATPase AAA2e-30134
NC_009665:639914:6482456482456503982154Shewanella baltica OS185 chromosome, complete genomeATPase AAA2e-30134
NC_014117:442616:4932384932384955112274Burkholderia sp. CCGE1002 chromosome chromosome 1, completeAAA ATPase4e-30134
NC_008435:2658986:2722151272215127243102160Rhodopseudomonas palustris BisA53, complete genomehypothetical protein4e-30134
NC_003910:187630:2001942001942025602367Colwellia psychrerythraea 34H, complete genomeputative helicase5e-28126
NC_008740:2563278:2574464257446425767072244Marinobacter aquaeolei VT8, complete genomeAAA ATPase1e-25118
NC_007712:3382000:3399933339993334017921860Sodalis glossinidius str. 'morsitans', complete genomeexodeoxyribonuclease V alpha subunit5e-25117
NC_015713:2453409:2463825246382524652491425Simkania negevensis Z chromosome gsn.131, complete genomeexodeoxyribonuclease V subunit alpha7e-24113
NC_015562:1413264:1422784142278414260893306Methanotorris igneus Kol 5 chromosome, complete genomeexodeoxyribonuclease V6e-22106
NC_015437:1066014:109637710963771096679303Selenomonas sputigena ATCC 35185 chromosome, complete genome1e-21105
NC_019940:2546500:2565827256582725677221896Thioflavicoccus mobilis 8321 chromosome, complete genomeexodeoxyribonuclease V subunit alpha5e-21103
NC_004459:1794540:1794540179454017966542115Vibrio vulnificus CMCP6 chromosome I, complete sequenceATP-dependent exoDNAse alpha subunit7e-21102
NC_011745:3197584:3213407321340732152331827Escherichia coli ED1a chromosome, complete genomeexonuclease V subunit alpha2e-20101
NC_008253:2965573:2981289298128929831151827Escherichia coli 536, complete genomeexodeoxyribonuclease V alpha chain2e-20101
NC_010694:3055403:3053556305355630554061851Erwinia tasmaniensis, complete genomeExodeoxyribonuclease V alpha chain2e-20101
NC_009481:1365000:1385306138530613869191614Synechococcus sp. WH 7803 chromosome, complete genomeexodeoxyribonuclease V subunit alpha2e-20101
NC_007946:3125577:3141071314107131428971827Escherichia coli UTI89, complete genomeexodeoxyribonuclease V alpha chain2e-20101
NC_011742:3057444:3072950307295030747761827Escherichia coli S88 chromosome, complete genomeexonuclease V subunit alpha2e-20101
NC_010498:3023442:3039266303926630410921827Escherichia coli SMS-3-5, complete genomeexodeoxyribonuclease V, alpha subunit4e-20100
NC_013361:3823347:3839171383917138409971827Escherichia coli O26:H11 str. 11368 chromosome, complete genomeexonuclease V subunit alpha4e-20100
NC_007613:2699500:2713369271336927151951827Shigella boydii Sb227, complete genomeATP-dependent dsDNA/ssDNA exonuclease V subunit4e-20100
NC_018645:4945698:4951424495142449534392016Desulfobacula toluolica Tol2, complete genomeexodeoxyribonuclease V subunit alpha3e-1997.8
NC_015573:776209:8021148021148046932580Desulfotomaculum kuznetsovii DSM 6115 chromosome, complete genomehypothetical protein1e-1792.8
NC_010803:1436397:1452865145286514546311767Chlorobium limicola DSM 245, complete genomeexodeoxyribonuclease V, alpha subunit2e-1791.7
NC_016111:5515462:5529101552910155314072307Streptomyces cattleya NRRL 8057, complete genomehypothetical protein8e-1686.3
NC_016109:7445603:7469591746959174718582268Kitasatospora setae KM-6054, complete genomehypothetical protein1e-1585.9
NC_008639:1573971:1590428159042815921731746Chlorobium phaeobacteroides DSM 266, complete genomeexodeoxyribonuclease V, alpha subunit2e-1585.1
NC_014370:885937:9236959236959272943600Prevotella melaninogenica ATCC 25845 chromosome chromosome I,hypothetical protein2e-1584.7
NC_011206:2512667:2519649251964925216011953Acidithiobacillus ferrooxidans ATCC 53993, complete genomeexodeoxyribonuclease V, alpha subunit1e-1482.4
NC_017271:4852351:4871059487105948733682310Xanthomonas campestris pv. raphani 756C chromosome, completeexodeoxyribonuclease V subunit alpha3e-1481.3
NC_007086:5064053:5079498507949850817352238Xanthomonas campestris pv. campestris str. 8004, complete genomeexodeoxyribonuclease V alpha chain2e-1481.3
NC_003902:4989855:5006813500681350090502238Xanthomonas campestris pv. campestris str. ATCC 33913, completeexodeoxyribonuclease V alpha chain2e-1481.3
NC_010688:4991410:5009134500913450113682235Xanthomonas campestris pv. campestris, complete genomeexodeoxyribonuclease V alpha chain2e-1481.3
NC_012791:4794362:4818231481823148203572127Variovorax paradoxus S110 chromosome 1, complete genomeexodeoxyribonuclease V, alpha subunit4e-1480.5
NC_010814:1441327:1446527144652714501713645Geobacter lovleyi SZ, complete genomeExodeoxyribonuclease V2e-1378.6
NC_017259:480656:4806564806564824641809Buchnera aphidicola str. Ua (Uroleucon ambrosiae) chromosome,exodeoxyribonuclease V 67 kDa polypeptide3e-1377.8
NC_004061:498483:5020345020345038421809Buchnera aphidicola str. Sg (Schizaphis graminum), complete genomeexodeoxyribonuclease V 67 kDa polypeptide4e-1377.4
NC_014924:3334386:3352228335222833541021875Pseudoxanthomonas suwonensis 11-1 chromosome, complete genomeexodeoxyribonuclease V, alpha subunit8e-1376.3
NC_015740:3678342:3676216367621636783452130Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, completeexodeoxyribonuclease V subunit alpha8e-1376.3
NC_016048:522637:5316525316525329381287Oscillibacter valericigenes Sjm18-20, complete genomehypothetical protein1e-1275.5
NC_013851:3478153:3493536349353634957582223Allochromatium vinosum DSM 180 chromosome, complete genomeexodeoxyribonuclease V, alpha subunit1e-1172
NC_018691:3496420:3496420349642034983661947Alcanivorax dieselolei B5 chromosome, complete genomeExodeoxyribonuclease V alpha chain3e-1170.9
NC_015508:296856:2968562968563006473792Agrobacterium sp. H13-3 chromosome linear, complete sequenceConjugal transfer protein traA4e-1170.9
NC_015160:2295010:2295010229501022964281419Odoribacter splanchnicus DSM 20712 chromosome, complete genomeexonuclease V subunit alpha6e-1170.1
NC_015177:258504:2653212653212667121392Pedobacter saltans DSM 12145 chromosome, complete genomeexonuclease V subunit alpha1e-1068.9
NC_002663:564958:5936695936695956421974Pasteurella multocida subsp. multocida str. Pm70, complete genomeRecD3e-0964.7
NC_011991:65368:6536865368694384071Agrobacterium vitis S4 plasmid pAtS4b, complete sequenceTi-type conjugative transfer relaxase TraA1e-0862.4
NC_015703:4348545:4363702436370243651201419Runella slithyformis DSM 19594 chromosome, complete genomeATP-dependent exoDNAse (exonuclease V)1e-0862
NC_007575:1694877:1701208170120817045463339Sulfurimonas denitrificans DSM 1251, complete genomeexonuclease V subunit alpha4e-0860.8
NC_008699:1132790:1161255116125511638732619Nocardioides sp. JS614, complete genomeATP-dependent exoDNAse (exonuclease V) alpha subunit - helicase superfamily I member-like5e-0860.1
NC_019673:1988853:2027358202735820317464389Saccharothrix espanaensis DSM 44229 complete genomehypothetical protein3e-0758.2
NC_020054:3501467:350146735014673502270804Fibrella aestuarina BUZ 2 drat genomeexonuclease V subunit alpha3e-0757.8
NC_016631:3917253:3931643393164339343962754Granulicella mallensis MP5ACTX8 chromosome, complete genomeconjugative relaxase domain-containing protein5e-0757
NC_014816:1592799:1592799159279915960233225Asticcacaulis excentricus CB 48 chromosome 1, complete sequenceti-type conjugative transfer relaxase traa1e-0655.8
NC_011916:467106:4887684887684915782811Caulobacter crescentus NA1000 chromosome, complete genomeDNA relaxase/conjugal transfer nickase-helicase TrwC2e-0655.5
NC_010572:82000:1130761130761169873912Streptomyces griseus subsp. griseus NBRC 13350, complete genomeputative exodeoxyribonuclease-like protein3e-0654.3
NC_010572:8408500:8428943842894384328543912Streptomyces griseus subsp. griseus NBRC 13350, complete genomeputative exodeoxyribonuclease-like protein3e-0654.3
NC_013730:2359939:2384855238485523876142760Spirosoma linguale DSM 74, complete genomeconjugative relaxase domain protein4e-0653.9