Pre_GI: OUP Neighbours

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Query: NC_006511:4119332 Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC

D: 35.1897

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This serovar has a narrow host range and causes a typhoid-like (paratyphoid fever) illness in humans. It is especially prevalent in southern and eastern Asia, and has been associated with some particularly virulent outbreaks. A number of isolates are increasingly antibiotic resistant. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.

Number of Neighbours: 30




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandSubject Host Description Compositional Similarity Proposed Island FlowSubject Island D
NC_012917:3378759Pectobacterium carotovorum subsp. carotovorum PC1, complete genome75.0398 %Subject ←→ Query31.1132
NC_004631:283289*Salmonella enterica subsp. enterica serovar Typhi Ty2, complete77.6562 %Subject ←→ Query31.6756
NC_010102:283364*Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,77.6195 %Subject ←→ Query33.8947
NC_004547:3817656Erwinia carotovora subsp. atroseptica SCRI1043, complete genome77.4418 %Subject ←→ Query34.15
NC_014121:1038554Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete75.4289 %Subject ←→ Query34.8127
NC_013282:3962188*Cronobacter turicensis, complete genome79.2831 %Subject ←→ Query34.8164
NC_012779:3316877Edwardsiella ictaluri 93-146, complete genome76.3634 %Subject ←→ Query34.9445
NC_003198:3586000*Salmonella enterica subsp. enterica serovar Typhi str. CT18,92.1262 %Subject ←→ Query35.6335
NC_006905:3942753Salmonella enterica subsp. enterica serovar Choleraesuis str75.4013 %Subject ←→ Query35.749
NC_011750:4543135*Escherichia coli IAI39 chromosome, complete genome78.8358 %Subject ←→ Query36.053
NC_004631:685357*Salmonella enterica subsp. enterica serovar Typhi Ty2, complete77.6961 %Subject ←→ Query36.1113
NC_010473:4256000*Escherichia coli str. K-12 substr. DH10B, complete genome83.413 %Subject ←→ Query36.1868
NC_006511:682863*Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC77.7145 %Subject ←→ Query36.3874
NC_011080:2789744*Salmonella enterica subsp. enterica serovar Newport str. SL254,82.8952 %Subject ←→ Query36.512
NC_000913:4159090*Escherichia coli K12, complete genome83.6274 %Subject ←→ Query36.6397
NC_003198:2297837Salmonella enterica subsp. enterica serovar Typhi str. CT18,76.2898 %Subject ←→ Query37.159
NC_011080:2342672Salmonella enterica subsp. enterica serovar Newport str. SL254,75.9835 %Subject ←→ Query37.4165
NC_009648:3476000Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome75.8487 %Subject ←→ Query37.4593
NC_006905:2355290Salmonella enterica subsp. enterica serovar Choleraesuis str76.2163 %Subject ←→ Query37.6094
NC_011149:2294500Salmonella enterica subsp. enterica serovar Agona str. SL483,76.0754 %Subject ←→ Query38.0253
CU928160:4248621*Escherichia coli IAI1 chromosome, complete genome81.3235 %Subject ←→ Query38.0654
NC_010468:4455201*Escherichia coli ATCC 8739, complete genome83.1893 %Subject ←→ Query38.0958
NC_003198:2703013*Salmonella enterica subsp. enterica serovar Typhi str. CT18,81.8903 %Subject ←→ Query38.1505
NC_013716:4824541*Citrobacter rodentium ICC168, complete genome76.6912 %Subject ←→ Query38.2235
NC_006511:3364448*Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC79.1483 %Subject ←→ Query38.4606
NC_013282:1256769Cronobacter turicensis, complete genome75.6189 %Subject ←→ Query38.8742
NC_006905:2805877*Salmonella enterica subsp. enterica serovar Choleraesuis str81.7279 %Subject ←→ Query39.786
NC_014121:1822895Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete75.0398 %Subject ←→ Query40.59
NC_013592:1424560Dickeya dadantii Ech586, complete genome75.5116 %Subject ←→ Query41.2418
NC_013282:3216226*Cronobacter turicensis, complete genome76.1274 %Subject ←→ Query41.2788