Pre_GI Gene

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Host: NC_012917 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_012917:3378759 Pectobacterium carotovorum subsp. carotovorum PC1, complete genome

Host Lineage: Pectobacterium carotovorum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Host. Pectobacterium carotovorum causes soft-rot diseases of various plant hosts through degradation of the plant cell walls. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium.


StartEndLengthCDS descriptionQuickGO ontologyBLASTP
33787593379067309YCII-related proteinQuickGO ontologyBLASTP
33790853379714630NADPH dehydrogenase quinoneQuickGO ontologyBLASTP
33797493380522774putative secreted proteinQuickGO ontologyBLASTP
338069333817181026transcriptional regulator AraC familyQuickGO ontologyBLASTP
338182233832791458Sel1 domain protein repeat-containing proteinQuickGO ontologyBLASTP
33834543384002549hypothetical protein
33841153384330216putative transcriptional regulator NlpQuickGO ontologyBLASTP
33848343385412579hypothetical proteinBLASTP
3385556338565499hypothetical protein
33857873386110324addiction module killer proteinQuickGO ontologyBLASTP
33861153386453339addiction module antidote proteinQuickGO ontologyBLASTP
338655933881361578GMP synthase large subunitQuickGO ontologyBLASTP
338824433897101467inosine-5-monophosphate dehydrogenaseQuickGO ontologyBLASTP
338988233912701389exodeoxyribonuclease VII large subunitQuickGO ontologyBLASTP
339150133925441044peptidase M4 thermolysinQuickGO ontologyBLASTP
33925413392885345hypothetical proteinBLASTP
33928943393118225hypothetical proteinBLASTP
33931643394123960Auxin Efflux CarrierQuickGO ontologyBLASTP
339421633957031488small GTP-binding proteinQuickGO ontologyBLASTP
339586633970471182outer membrane assembly lipoprotein YfgLQuickGO ontologyBLASTP