Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_012947: Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, complete

NCBI: NC_012947

Host Lineage: Escherichia coli; Escherichia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Isolation: Derivative of E. coli strain B; Temp: Mesophile; Temp: 37 C; Habitat: Host, Human intestinal microflora. This organism was named for its discoverer, Theodore Escherich, and is one of the premier model organisms used in the study of bacterial genetics, physiology, and biochemistry. This enteric organism is typically present in the lower intestine of humans, where it is the dominant facultative anaerobe present, but it is only one minor constituent of the complete intestinal microflora. E. coli, is capable of causing various diseases in its host, especially when they acquire virulence traits. E. coli can cause urinary tract infections, neonatal meningitis, and many different intestinal diseases, usually by attaching to the host cell and introducing toxins that disrupt normal cellular processes.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1445126718422673Island text1.6730935.049335.1797Neighbours41BLASTN+IslandViewer 44512.gbk
29493012102926100Island text2.2692834.715819.4394Neighbours41BLASTN+IslandViewer 94930.gbk
3126596*15237825783Island text1.5746729.389620.0938Neighbours41BLASTNIslandViewer 126596.gbk
424800029129643297Island text2.0698531.045920.3106Neighbours41BLASTN+248000.gbk
563075765318722431Island text1.7005729.562528.8959Neighbours41BLASTN+630757.gbk
670806473094222879Island text2.0852330.713623.7369Neighbours41BLASTN+IslandViewer 708064.gbk
71106000*112920723208Island text2.6619336.391625.6664Neighbours41BLASTN+IslandViewer 1106000.gbk
81363724138281419091Island text1.5650127.946729.6047Neighbours41BLASTN+IslandViewer 1363724.gbk
91720732175290832177Island text4.3863844.197321.5601Neighbours41BLASTN+IslandViewer 1720732.gbk
101769438*181359944162Island text1.5868430.277724.7906Neighbours41BLASTN+IslandViewer 1769438.gbk
112189533220898219450Island text1.5482629.995527.1085Neighbours41BLASTN+IslandViewer 2189533.gbk
122228235224726919035Island text1.625527.9727.8901Neighbours41BLASTN+IslandViewer 2228235.gbk
132366000*239123525236Island text2.1155434.274525.1416Neighbours41BLASTN+IslandViewer 2366000.gbk
142566754*259317326420Island text2.3831634.618916.2406Neighbours41BLASTNIslandViewer 2566754.gbk
152898179*291972421546Island text1.6085929.322723.2464Neighbours41BLASTN+IslandViewer 2898179.gbk
163015985*303834422360Island text1.3490631.01939.0669Neighbours41BLASTN+IslandViewer 3015985.gbk
173077922310145523534Island text1.9527433.13823.2604Neighbours41BLASTN+IslandViewer 3077922.gbk
183231893*325868626794Island text2.1796335.692120.9347Neighbours41BLASTN+IslandViewer 3231893.gbk
193487392*351346126070Island text2.0454333.194820.6416Neighbours41BLASTNIslandViewer 3487392.gbk
203619384*363949920116Island text1.7121531.383822.3002Neighbours41BLASTN+IslandViewer 3619384.gbk
213753375*377559922225Island text2.1533632.754729.4427Neighbours41BLASTN+IslandViewer 3753375.gbk
223883484390875125268Island text1.9990132.136422.3992Neighbours41BLASTN+IslandViewer 3883484.gbk
233917619*393625718639Island text1.5556332.198421.7597Neighbours41BLASTN+IslandViewer 3917619.gbk
243947238*396607218835Island text1.6545527.930419.3659Neighbours41BLASTN+IslandViewer 3947238.gbk
254106031412679720767Island text1.4739828.404725.2528Neighbours41BLASTN+4106031.gbk