Pre_GI Gene

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Host: NC_012947 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_012947:1106000 Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, complete

Host Lineage: Escherichia coli; Escherichia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Isolation: Derivative of E. coli strain B; Temp: Mesophile; Temp: 37 C; Habitat: Host, Human intestinal microflora. This organism was named for its discoverer, Theodore Escherich, and is one of the premier model organisms used in the study of bacterial genetics, physiology, and biochemistry. This enteric organism is typically present in the lower intestine of humans, where it is the dominant facultative anaerobe present, but it is only one minor constituent of the complete intestinal microflora. E. coli, is capable of causing various diseases in its host, especially when they acquire virulence traits. E. coli can cause urinary tract infections, neonatal meningitis, and many different intestinal diseases, usually by attaching to the host cell and introducing toxins that disrupt normal cellular processes.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
1106102110738212814-aminobutyrate aminotransferaseQuickGO ontologyBLASTP
110739611088441449succinate-semialdehyde dehydrogenase IQuickGO ontologyBLASTP
110886711101351269hydroxyglutarate oxidaseQuickGO ontologyBLASTP
11101541111131978hypothetical proteinBLASTP
11114371111940504IS1 transposaseQuickGO ontologyBLASTP
11118591112134276Insertion element proteinQuickGO ontologyBLASTP
11125331113429897RepB plasmid partitionQuickGO ontologyBLASTP
11134261114322897ParB domain protein nucleaseQuickGO ontologyBLASTP
111431211158681557RecombinaseQuickGO ontologyBLASTP
111615111173801230integraseQuickGO ontologyBLASTP
11181241118606483SsrA-binding proteinQuickGO ontologyBLASTP
11187381119214477hypothetical proteinBLASTP
11192041119494291hypothetical proteinBLASTP
11195561119897342hypothetical proteinBLASTP
112004611217071662recombination and repair proteinQuickGO ontologyBLASTP
11217931122671879inorganic polyphosphateATP-NAD kinaseQuickGO ontologyBLASTP
11227941123387594heat shock protein GrpEQuickGO ontologyBLASTP
112344211247041263hypothetical proteinBLASTP
11247491125615867cytochrome C assembly proteinQuickGO ontologyBLASTP
112570711270681362signal recognition particle proteinQuickGO ontologyBLASTP
1127205112745324930S ribosomal protein S16QuickGO ontologyBLASTP
1127472112802054916S rRNA-processing protein RimMQuickGO ontologyBLASTP
11280511128818768tRNA guanine-N1--methyltransferaseQuickGO ontologyBLASTP
1128860112920734850S ribosomal protein L19QuickGO ontologyBLASTP