Pre_GI: BLASTP Hits

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Query: NC_010658:4494103:4504372 Shigella boydii CDC 3083-94, complete genome

Start: 4504372, End: 4504824, Length: 453

Host Lineage: Shigella boydii; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (strain BS512; serotype 18) was originally isolated from a 12-year-old boy in Arizona, USA by Dr. Nancy Stockbine. It is a member of Group 1 as determined by limited sequence analysis and can invade HeLa cells. Pathogenicity and virulence have been verified during in vitro experimentation, and multiple plasmids are present in this strain. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. Shigella spp. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This species is uncommon except in India, where it was first isolated. Progression to clinical dysentery occurs in most patients infected with this organism.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015061:4203767:424176942417694242239471Rahnella sp. Y9602 chromosome, complete genomeConserved hypothetical protein CHP000221e-54211
NC_015061:3840463:386303738630373863690654Rahnella sp. Y9602 chromosome, complete genomeConserved hypothetical protein CHP000228e-1579.3
NC_011742:4795733:480429648042964804748453Escherichia coli S88 chromosome, complete genomehypothetical protein1e-83308
NC_010498:4821519:483008348300834830535453Escherichia coli SMS-3-5, complete genomehypothetical protein2e-83307
NC_009348:3819271:384048638404863840956471Aeromonas salmonicida subsp. salmonicida A449, complete genomehypothetical protein1e-1788.6
NC_017047:3907854:393045139304513931104654Rahnella aquatilis HX2 chromosome, complete genomehypothetical protein7e-1579.3
NC_013508:1491945:149442714944271494894468Edwardsiella tarda EIB202, complete genomehypothetical protein1e-1478.6
NC_017154:3139614:315665831566583157125468Yersinia pestis D106004 chromosome, complete genomehypothetical protein3e-1477.4
NC_008149:2411161:241463024146302415097468Yersinia pestis Nepal516, complete genomehypothetical protein3e-1477.4
NC_006155:3040769:304423930442393044706468Yersinia pseudotuberculosis IP 32953, complete genomehypothetical protein3e-1477.4
NC_016048:3667890:367458336745833675035453Oscillibacter valericigenes Sjm18-20, complete genomehypothetical protein6e-0856.6
NC_012947:3947238:395551739555173955969453Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completehypothetical protein2e-84310
AC_000091:4472000:447954244795424479994453Escherichia coli W3110 DNA, complete genomehypothetical protein1e-83307
NC_010634:3155741:315574131557413156211471Yersinia pseudotuberculosis PB1/+, complete genomehypothetical protein6e-1579.7
NC_006155:3237990:323799032379903238460471Yersinia pseudotuberculosis IP 32953, complete genomehypothetical protein9e-1579
NC_017160:2740870:275626727562672756734468Yersinia pestis D182038 chromosome, complete genomehypothetical protein3e-1477.4
NC_010634:2960000:296214729621472962614468Yersinia pseudotuberculosis PB1/+, complete genomehypothetical protein3e-1477.4
NC_003143:2849377:285284628528462853313468Yersinia pestis CO92, complete genomehypothetical protein3e-1477.4
NC_010334:722408:730938730938731399462Shewanella halifaxensis HAW-EB4, complete genomehypothetical protein3e-1167.4
NC_012967:4449576:445813944581394458591453Escherichia coli B str. REL606 chromosome, complete genomehypothetical protein2e-84310
NC_010473:4564590:457469345746934575145453Escherichia coli str. K-12 substr. DH10B, complete genomehypothetical protein1e-83307
NC_017047:4298207:433565443356544336124471Rahnella aquatilis HX2 chromosome, complete genomehypothetical protein1e-54211
NC_009655:2148433:216185321618532162317465Actinobacillus succinogenes 130Z chromosome, complete genomehypothetical protein2e-1994.4
NC_009708:1497898:151553315155331516003471Yersinia pseudotuberculosis IP 31758 chromosome, complete genomehypothetical protein9e-1579
NC_017168:2892000:290912329091232909590468Yersinia pestis A1122 chromosome, complete genomehypothetical protein3e-1477.4
NC_010465:1724000:174170017417001742167468Yersinia pseudotuberculosis YPIII, complete genomehypothetical protein3e-1477.4
NC_005810:2613456:261692526169252617392468Yersinia pestis biovar Microtus str. 91001, complete genomehypothetical protein3e-1477.4
NC_008800:1497746:151648215164821516949468Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,hypothetical protein8e-1372.8
NC_007613:4217557:424708642470864247547462Shigella boydii Sb227, complete genomehypothetical protein3e-85313
NC_000913:4462782:447288544728854473337453Escherichia coli K12, complete genomehypothetical protein1e-83307
NC_015968:511282:515222515222515674453Enterobacter asburiae LF7a chromosome, complete genomehypothetical protein9e-71265
NC_008570:4009762:402845640284564028926471Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genomehypothetical protein2e-2097.8
NC_020291:4305521:430998543099854310440456Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomehypothetical protein4e-1683.6
NC_017265:1521276:153993915399391540406468Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,hypothetical protein3e-1477.4
NC_009708:1694685:171030017103001710767468Yersinia pseudotuberculosis IP 31758 chromosome, complete genomehypothetical protein3e-1477.4
NC_010159:1861465:186493418649341865401468Yersinia pestis Angola, complete genomehypothetical protein3e-1477.4
NC_013204:2305140:230843123084312308886456Eggerthella lenta DSM 2243, complete genomehypothetical protein5e-1476.6
NC_015425:2072703:209759820975982098053456Clostridium botulinum BKT015925 chromosome, complete genomehypothetical protein6e-1063.2
NC_014500:4049384:407327940732794073908630Dickeya dadantii 3937 chromosome, complete genomeProtein yjgK2e-1581.6
NC_016641:373623:388463388463388921459Paenibacillus terrae HPL-003 chromosome, complete genomeputative beta-D-galactosidase5e-1166.6
NC_020418:1397112:141131314113131411786474Morganella morganii subsp. morganii KT, complete genomePutative sugar isomerase involved in processing of exogenous sialic acid2e-0961.6
NC_014965:2200974:222025322202532220720468Vibrio vulnificus MO6-24/O chromosome I, complete sequencesugar isomerase1e-24111
NC_019978:2532640:254125625412562541705450Halobacteroides halobius DSM 5150, complete genomeuncharacterized protein, YhcH/YjgK/YiaL family1e-0962.4
NC_013956:595320:631839631839632444606Pantoea ananatis LMG 20103 chromosome, complete genomeYiaL8e-1889