Pre_GI: BLASTP Hits

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Query: NC_009708:2537557:2554676 Yersinia pseudotuberculosis IP 31758 chromosome, complete genome

Start: 2554676, End: 2555386, Length: 711

Host Lineage: Yersinia pseudotuberculosis; Yersinia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is serotype 1b and was isolated in 1966 from the stools of a patient presenting with scarlet-like fever in the Primorski region of the former USSR. Environmental bacterium that causes gastrointestinal disease. Specific virulence factors are encoded within pathogenicity islands (PAIs) that are required for the invasive phenotype associated with Yersinia infections. One key virulence plasmid contained by the three human-specific pathogens is pCD1/pYv, which encodes a type III secretion system for the delivery of virulence proteins that contribute to internalization into the host cell. This organism was first isolated in 1883 by Malassez and Vignal and is termed pseudotuberculosis since it causes lesions in the lung that are similar to those observed during tuberculosis infection. It is ubiquitous in the environment and is a food and waterborne pathogen that affects animals as well as humans by causing gastroenteritis like Yersinia enterocolitica.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_020418:2910593:291496229149622915621660Morganella morganii subsp. morganii KT, complete genomeSOS-response transcriptional repressors (RecA-mediated autopeptidases)7e-72270
NC_012731:2083650:209731020973102098035726Klebsiella pneumoniae NTUH-K2044 chromosome, complete genomeputative repressor protein of prophage3e-54211
NC_015968:3301958:331235333123533313006654Enterobacter asburiae LF7a chromosome, complete genomephage repressor like XRE family transcriptional regulator2e-48192
NC_017047:1906000:190737719073771908024648Rahnella aquatilis HX2 chromosome, complete genomeputative repressor protein of prophage5e-43174
NC_004431:3040953:305923330592333059859627Escherichia coli CFT073, complete genomePutative repressor protein of prophage1e-40166
NC_007645:605500:605820605820606407588Hahella chejuensis KCTC 2396, complete genomeSOS-response transcriptional repressors (RecA-mediated autopeptidase)2e-39162
NC_007946:2625461:262998526299852630635651Escherichia coli UTI89, complete genomerepressor protein9e-35147
NC_009800:289000:301440301440302090651Escherichia coli HS, complete genomeP22 repressor protein c21e-34146
NC_012947:3015985:302163430216343022284651Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeXRE family transcriptional regulator1e-34146
NC_013361:3112023:312984531298453130495651Escherichia coli O26:H11 str. 11368 chromosome, complete genomephage repressor protein CI1e-34146
NC_013941:3300000:330265133026513303301651Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeP22 repressor protein c21e-34146
NC_011083:374000:385883385883386533651Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,P22 repressor protein c22e-34145
NC_010554:2646806:265134526513452651992648Proteus mirabilis HI4320, complete genomephage repressor9e-27120
NC_009778:2993218:301640330164033017065663Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein7e-26117
NC_013850:1887556:189996518999651900627663Klebsiella variicola At-22 chromosome, complete genometranscriptional regulator, XRE family2e-24112
NC_009783:1956000:195674419567441957409666Vibrio harveyi ATCC BAA-1116 chromosome I, complete sequencehypothetical protein9e-24110
NC_015663:4767443:478544147854414786193753Enterobacter aerogenes KCTC 2190 chromosome, complete genomeP22 repressor protein c22e-23109
NC_004578:3849835:385799038579903858721732Pseudomonas syringae pv. tomato str. DC3000, complete genomerepressor protein c21e-22106
NC_011415:2153243:216098621609862161642657Escherichia coli SE11 chromosome, complete genomeputative phage repressor9e-22103
NC_016809:389561:394152394152394811660Haemophilus influenzae 10810, complete genomehypothetical protein1e-21103
NC_008258:269806:287337287337287969633Shigella flexneri 5 str. 8401, complete genomeputative prophage repressor CI4e-21101
NC_017986:5509569:552387155238715524602732Pseudomonas putida ND6 chromosome, complete genometranscriptional repressor pyocin R2 PP3e-2099
NC_002947:3404000:341945034194503420181732Pseudomonas putida KT2440, complete genomepyocin R2_PP, transcriptional repressor, CI/C2 family2e-1996.3
NC_011283:4212000:422109942210994221815717Klebsiella pneumoniae 342 chromosome, complete genomephage repressor protein9e-1994
NC_020418:3133831:313802131380213138731711Morganella morganii subsp. morganii KT, complete genomerepressor protein CI2e-1892.8
NC_009348:1663870:166905016690501669733684Aeromonas salmonicida subsp. salmonicida A449, complete genomephage repressor3e-1892.4
NC_007712:2028500:206857220685722069294723Sodalis glossinidius str. 'morsitans', complete genomephage repressor3e-1892
NC_014306:3524980:356790335679033568601699Erwinia billingiae Eb661, complete genomeRepressor protein cI1e-1790.1
NC_015379:4691868:469213346921334692831699Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,Putative phage regulatory protein4e-1788.2
NC_010002:2110953:212346721234672124114648Delftia acidovorans SPH-1, complete genomepeptidase S24 and S26 domain protein1e-1686.7
NC_011601:2614691:261961826196182620331714Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomerepressor protein1e-1686.3
NC_012759:4132527:414282841428284143541714Escherichia coli BW2952 chromosome, complete genomeRepressor protein CI2e-1686.3
NC_012660:3116500:312771631277163128423708Pseudomonas fluorescens SBW25 chromosome, complete genomee14 prophage; putative phage repressor5e-1684.7
NC_017328:303987:317642317642318337696Shigella flexneri 2002017 chromosome, complete genomeCI protein1e-1583.6
NC_013364:2645438:265235726523572652980624Escherichia coli O111:H- str. 11128, complete genomeputative phage repressor protein CI1e-1583.6
NC_011353:305820:305820305820306533714Escherichia coli O157:H7 str. EC4115 chromosome, complete genomeprophage repressor4e-1581.6
NC_002655:301940:301940301940302653714Escherichia coli O157:H7 EDL933, complete genomeputative cI repressor protein for prophage CP-933H4e-1581.6
NC_002695:301939:301939301939302652714Escherichia coli O157:H7 str. Sakai, complete genomecI4e-1581.6
NC_014837:2354241:235780423578042358529726Pantoea sp. At-9b chromosome, complete genomeXRE family transcriptional regulator6e-1581.3
NC_011742:1177946:119125811912581191959702Escherichia coli S88 chromosome, complete genomeRepressor protein CI from phage origin1e-1480.1
NC_008563:1175035:118767011876701188365696Escherichia coli APEC O1, complete genomeputative CI repressor of bacteriophage1e-1479.7
NC_004431:1401681:141242714124271412849423Escherichia coli CFT073, complete genomeRepressor protein1e-1479.7
NC_007946:1239278:125028212502821250935654Escherichia coli UTI89, complete genomeputative CI repressor of bacteriophage1e-1479.7
NC_011601:1039500:105177110517711052424654Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomerepressor protein1e-1479.7
NC_013941:975353:989229989229989882654Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeCI protein1e-1479.7
NC_014910:1708045:172518017251801725950771Alicycliphilus denitrificans BC chromosome, complete genomepeptidase s24/s26a/s26b, conserved region protein1e-1376.6
NC_013941:3182576:319016231901623190836675Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehypothetical protein1e-1376.3
NC_012779:2184927:220196422019642202635672Edwardsiella ictaluri 93-146, complete genomerepressor protein CI8e-1373.9
NC_004129:2201780:221380922138092214522714Pseudomonas fluorescens Pf-5, complete genomepeptidase S24-like domain1e-1273.6
NC_007954:3887488:389894838989483899637690Shewanella denitrificans OS217, complete genometransciptional regulator1e-1273.6
NC_016809:1778000:177820117782011778866666Haemophilus influenzae 10810, complete genomehypothetical protein2e-1273.2
NC_004578:4499143:452278245227824523486705Pseudomonas syringae pv. tomato str. DC3000, complete genomerepressor protein cI3e-1272
NC_014562:1844268:185137318513731852005633Pantoea vagans C9-1 chromosome, complete genomeLexA repressor7e-1167.8
NC_006582:2944237:299182829918282992457630Bacillus clausii KSM-K16, complete genomeSOS-response transcriptional repressor1e-1067
NC_012791:2832001:285731328573132857981669Variovorax paradoxus S110 chromosome 1, complete genometranscriptional regulator, XRE family1e-1067
NC_020260:1615135:162344316234431623850408Cronobacter sakazakii Sp291, complete genometranscriptional repressor DicA3e-1065.5
NC_009800:320115:326165326165326806642Escherichia coli HS, complete genomehelix-turn-helix/peptidase S24-like domain protein5e-1064.7
NC_017986:4091051:410215841021584102514357Pseudomonas putida ND6 chromosome, complete genomerepressor protein CI5e-1064.7
NC_011750:5045927:505908250590825059756675Escherichia coli IAI39 chromosome, complete genomerepressor protein phage e14; e14 prophage1e-0963.2
AC_000091:1191353:120383612038361204510675Escherichia coli W3110 DNA, complete genomerepressor protein phage e143e-0962.4
NC_007946:2931364:293500329350032935677675Escherichia coli UTI89, complete genomeputative phage repressor3e-0962.4
NC_008563:2946391:295003029500302950704675Escherichia coli APEC O1, complete genomeputative phage repressor3e-0962.4
NC_000913:1188999:120148212014821202156675Escherichia coli K12, complete genomee14 prophage; repressor protein phage e143e-0962.4
NC_011742:2863316:286734128673412868015675Escherichia coli S88 chromosome, complete genomerepressor protein phage e14; e14 prophage3e-0962.4
NC_011751:1859606:188001818800181880476459Escherichia coli UMN026 chromosome, complete genometranscriptional repressor DicA5e-0961.6
CU928145:1408280:141408614140861414544459Escherichia coli 55989 chromosome, complete genomeputative repressor protein of division inhibition from phage origin5e-0961.6
NC_011748:1408280:141408614140861414544459Escherichia coli 55989, complete genometranscriptional repressor DicA5e-0961.6
NC_011601:1269500:127378112737811274188408Escherichia coli O127:H6 str. E2348/69 chromosome, complete genometranscriptional repressor DicA5e-0961.6
NC_013361:2138716:215983821598382160245408Escherichia coli O26:H11 str. 11368 chromosome, complete genometranscriptional repressor DicA5e-0961.2
NC_013446:3034486:304282630428263043365540Comamonas testosteroni CNB-2, complete genomeputative prophage repressor2e-0859.7
NC_006138:2288261:230836023083602309070711Desulfotalea psychrophila LSv54, complete genomesimilar to repressor protein2e-0859.7
NC_010468:2265423:226963722696372270044408Escherichia coli ATCC 8739, complete genometranscriptional regulator, XRE family5e-0858.2
AC_000091:1627049:164964816496481650055408Escherichia coli W3110 DNA, complete genomepredicted regulator for DicB5e-0858.2
CP002516:2305659:231271923127192313126408Escherichia coli KO11, complete genomehelix-turn-helix domain protein5e-0858.2
CP002185:1770815:179273017927301793137408Escherichia coli W, complete genomeQin prophage; predicted regulator for DicB5e-0858.2
NC_000913:1625500:164595816459581646365408Escherichia coli K12, complete genomeQin prophage; predicted regulator for DicB5e-0858.2
CU928160:1668842:169078616907861691193408Escherichia coli IAI1 chromosome, complete genomeputative transcriptional regulator for DicB; Qin prophage5e-0858.2
NC_010473:1712984:173558317355831735990408Escherichia coli str. K-12 substr. DH10B, complete genomeQin prophage; predicted regulator for DicB5e-0858.2
NC_011741:1668842:169078616907861691193408Escherichia coli IAI1 chromosome, complete genometranscriptional repressor DicA5e-0858.2
NC_012759:1517500:153801715380171538424408Escherichia coli BW2952 chromosome, complete genometranscriptional repressor DicA5e-0858.2
NC_016902:2305659:231271923127192313126408Escherichia coli KO11FL chromosome, complete genomehelix-turn-helix domain-containing protein5e-0858.2
NC_016830:5031819:504224950422495042896648Pseudomonas fluorescens F113 chromosome, complete genomepeptidase s24-like domain protein7e-0857.8
NC_016612:3314846:332407433240743324481408Klebsiella oxytoca KCTC 1686 chromosome, complete genometranscriptional repressor DicA6e-0857.8
NC_007794:3218729:322968332296833230366684Novosphingobium aromaticivorans DSM 12444, complete genomeputative prophage repressor8e-0857.4
NC_021066:2226826:224423422442342244866633Raoultella ornithinolytica B6, complete genomehypothetical protein4e-0755.1
NC_009801:2193000:221593622159362216331396Escherichia coli E24377A, complete genomeputative transcriptional regulator DicA6e-0754.7
NC_012214:1974500:198214819821481982549402Erwinia pyrifoliae Ep1/96, complete genomeHTH-type transcriptional regulator DicA6e-0754.3
NC_014727:95875:103009103009103629621Lactobacillus delbrueckii subsp. bulgaricus ND02 chromosome,peptidase s24-like protein7e-0650.8