Pre_GI Gene

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Host: NC_004431 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_004431:3040953 Escherichia coli CFT073, complete genome

Host Lineage: Escherichia coli; Escherichia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (CFT073; O6:K2:H1) is uropathogenic E. coli (UPEC) one of the most common causes of non-hospital-acquired urinary tract infections. This organism was named for its discoverer, Theodore Escherich, and is one of the premier model organisms used in the study of bacterial genetics, physiology, and biochemistry. This enteric organism is typically present in the lower intestine of humans, where it is the dominant facultative anaerobe present, but it is only one minor constituent of the complete intestinal microflora. E. coli, is capable of causing various diseases in its host, especially when they acquire virulence traits. E. coli can cause urinary tract infections, neonatal meningitis, and many different intestinal diseases, usually by attaching to the host cell and introducing toxins that disrupt normal cellular processes.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
304095330423861434Putative capsid protein of prophageQuickGO ontologyBLASTP
304225330438541602Putative capsid structural protein of prophageQuickGO ontologyBLASTP
30438513044057207Putative head-tail joining protein of prophageQuickGO ontologyBLASTP
304405430459791926Putative DNA packaging protein of prophageQuickGO ontologyBLASTP
30459543046499546Prophage QSR DNA packaging protein NU1 homologQuickGO ontologyBLASTP
30460593046598540hypothetical protein
30478353048101267GnsB proteinQuickGO ontologyBLASTP
30486833048898216Cold shock-like protein cspIQuickGO ontologyBLASTP
30489173049075159hypothetical proteinBLASTP
30492603049757498Hypothetical protein ydfP precursorQuickGO ontologyBLASTP
30497543050287534Probable lysozyme from lambdoid prophage QinQuickGO ontologyBLASTP
30506093051181573Unknown protein encoded by prophageQuickGO ontologyBLASTP
30511653051380216Lysis protein S homolog from lambdoid prophage QinQuickGO ontologyBLASTP
30517533051884132hypothetical proteinBLASTP
30521333052348216Cold shock-like protein cspBQuickGO ontologyBLASTP
30526493052861213Cold shock-like protein cspFQuickGO ontologyBLASTP
30532773054059783Antitermination protein Q homolog from lambdoid prophage QinQuickGO ontologyBLASTP
30540433055038996Hypothetical protein ydfUQuickGO ontologyBLASTP
30550403055837798hypothetical proteinBLASTP
30558573056246390hypothetical proteinBLASTP
30562433056602360hypothetical proteinBLASTP
30565693057063495Hypothetical protein yfdNQuickGO ontologyBLASTP
30570603058001942Unknown protein encoded by cryptic prophageQuickGO ontologyBLASTP
30575723057739168hypothetical protein
30575783057760183hypothetical protein
30583463058954609Hypothetical protein ymfLQuickGO ontologyBLASTP
30589353059135201hypothetical protein
30592333059859627Putative repressor protein of prophageQuickGO ontologyBLASTP
30600753060587513hypothetical proteinBLASTP
30605603061243684hypothetical proteinBLASTP
30607313061417687hypothetical proteinBLASTP
30614833062307825Hypothetical protein yfdQQuickGO ontologyBLASTP
30624083062959552Hypothetical protein yfdRQuickGO ontologyBLASTP
30630443063934891hypothetical proteinBLASTP