Pre_GI: BLASTP Hits

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Query: NC_008258:3550500:3561468 Shigella flexneri 5 str. 8401, complete genome

Start: 3561468, End: 3562232, Length: 765

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. Shigella spp. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_004337:3590323:360105736010573601821765Shigella flexneri 2a str. 301, complete genomehypothetical protein5e-137486
NC_004741:4160500:417218241721824172946765Shigella flexneri 2a str. 2457T, complete genomehypothetical protein5e-137486
NC_017328:3625000:363577336357733636537765Shigella flexneri 2002017 chromosome, complete genomeTranscriptional regulator, CadC1e-136485
NC_016612:178864:189926189926190666741Klebsiella oxytoca KCTC 1686 chromosome, complete genometranscriptional regulator2e-1789.4
NC_020063:4170464:417859241785924179335744Enterobacteriaceae bacterium strain FGI 57, complete genomeDNA-binding protein with winged-HTH domain1e-1687
NC_020063:3690308:372029837202983721065768Enterobacteriaceae bacterium strain FGI 57, complete genomeDNA-binding protein with winged-HTH domain5e-1684.7
NC_013716:3708415:371423337142333714961729Citrobacter rodentium ICC168, complete genomeputative transcriptional regulator5e-1581.3
NC_014306:1981956:199196619919661992739774Erwinia billingiae Eb661, complete genomePutative response regulator2e-1479.7
NC_016514:2079975:209218420921842093011828Enterobacter cloacae EcWSU1 chromosome, complete genometranscriptional Regulator CadC1e-1273.9
NC_015663:5253242:526920552692055269951747Enterobacter aerogenes KCTC 2190 chromosome, complete genomehypothetical protein1e-1273.6
NC_020064:1962172:198639919863991986998600Serratia marcescens FGI94, complete genomeDNA-binding protein with winged-HTH domain1e-1273.6
NC_020211:103371:114278114278115075798Serratia marcescens WW4, complete genomehypothetical protein6e-1168.2
NC_015663:1934863:194734419473441947895552Enterobacter aerogenes KCTC 2190 chromosome, complete genomeCadC family transcriptional regulator2e-1066.2
NC_020181:3518396:352330035233003523851552Enterobacter aerogenes EA1509E, complete genomeputative transcriptional regulatory protein2e-1066.2
NC_013941:1314158:132417513241751324987813Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehypothetical protein3e-1065.5
NC_013008:1271621:128205512820551282867813Escherichia coli O157:H7 str. TW14359 chromosome, complete genomehypothetical protein3e-1065.5
NC_011353:1271335:128176912817691282581813Escherichia coli O157:H7 str. EC4115 chromosome, complete genometranscriptional regulator3e-1065.5
NC_002655:1413244:142326314232631424075813Escherichia coli O157:H7 EDL933, complete genomehypothetical protein3e-1065.5
NC_002695:1329472:133949113394911340303813Escherichia coli O157:H7 str. Sakai, complete genomeputative transcriptional regulator3e-1065.5
NC_016612:5296076:532264453226445323465822Klebsiella oxytoca KCTC 1686 chromosome, complete genometranscriptional regulator5e-1065.1
NC_020181:1317647:132480113248011325454654Enterobacter aerogenes EA1509E, complete genomehypothetical protein5e-1064.7
NC_013508:3188978:320403432040343204789756Edwardsiella tarda EIB202, complete genomehypothetical protein7e-1064.3
NC_015663:1:210462104621852807Enterobacter aerogenes KCTC 2190 chromosome, complete genomeputative transcriptional regulator8e-1064.3
NC_020063:3690308:370139537013953702237843Enterobacteriaceae bacterium strain FGI 57, complete genomeDNA-binding protein with winged-HTH domain1e-0963.5
NC_014618:1700784:170658417065841707351768Enterobacter cloacae SCF1 chromosome, complete genometranscriptional regulator CadC2e-0963.2
NC_013892:1503162:152270715227071523510804Xenorhabdus bovienii SS-2004 chromosome, complete genomehypothetical protein2e-0962.8
NC_015566:5197624:520388652038865204656771Serratia sp. AS12 chromosome, complete genometranscriptional regulator CadC3e-0962.4
NC_009648:293052:307297307297308121825Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomeputative sensory transducer3e-0962.4
NC_010694:436500:453335453335454240906Erwinia tasmaniensis, complete genomePutative transcriptional regulator5e-0961.6
NC_012125:3879917:389149138914913892279789Salmonella enterica subsp. enterica serovar Paratyphi C straintranscriptional regulator4e-0961.6
NC_016863:3905875:391949739194973920354858Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative transcriptional regulator7e-0961.2
NC_016612:1840325:185718718571871857753567Klebsiella oxytoca KCTC 1686 chromosome, complete genomeputative transcriptional regulatory protein8e-0960.8
NC_016860:3964000:398109439810943981858765Salmonella enterica subsp. enterica serovar Typhimurium strtranscriptional regulator C8e-0960.8
NC_011149:3863913:388269238826923883456765Salmonella enterica subsp. enterica serovar Agona str. SL483,transcriptional regulatory protein, C9e-0960.8
NC_009832:5214850:522341452234145224184771Serratia proteamaculans 568, complete genometranscriptional regulator, CadC1e-0860.5
NC_016514:891772:918584918584919363780Enterobacter cloacae EcWSU1 chromosome, complete genomehypothetical protein4e-0858.5
NC_012731:403670:420529420529421224696Klebsiella pneumoniae NTUH-K2044 chromosome, complete genomeputative transcriptional regulatory protein5e-0858.5
NC_016845:411844:429083429083429727645Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,hypothetical protein5e-0858.2
NC_015663:549425:556228556228557016789Enterobacter aerogenes KCTC 2190 chromosome, complete genomeputative transcriptional regulator7e-0857.8
NC_020181:4800298:482600948260094826797789Enterobacter aerogenes EA1509E, complete genomehypothetical protein7e-0857.8
NC_014121:3453815:346184634618463462583738Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completehypothetical protein1e-0757
NC_014618:2989000:299825829982582999097840Enterobacter cloacae SCF1 chromosome, complete genometranscriptional regulator CadC1e-0757
NC_011415:3217796:322727732272773228086810Escherichia coli SE11 chromosome, complete genomeputative transcriptional regulator2e-0756.6
NC_011750:3407500:341703634170363417845810Escherichia coli IAI39 chromosome, complete genomeputative transcriptional regulator2e-0756.6
NC_011751:3285646:329512932951293295938810Escherichia coli UMN026 chromosome, complete genomeputative transcriptional regulator2e-0756.6
NC_003198:3881221:388983538898353890691857Salmonella enterica subsp. enterica serovar Typhi str. CT18,2e-0756.6
NC_009832:5214850:522198652219865222753768Serratia proteamaculans 568, complete genometranscriptional regulator, CadC2e-0756.6
NC_015968:3023048:303106230310623031793732Enterobacter asburiae LF7a chromosome, complete genometranscriptional regulator, CadC2e-0756.2
NC_011741:3030324:303980530398053040614810Escherichia coli IAI1 chromosome, complete genomeputative transcriptional regulator3e-0755.8
NC_011353:3805819:381530038153003816109810Escherichia coli O157:H7 str. EC4115 chromosome, complete genometranscriptional regulator3e-0755.8
NC_002695:3702344:371090337109033711712810Escherichia coli O157:H7 str. Sakai, complete genomeputative sensory transducer3e-0755.8
CP002516:903241:926665926665927474810Escherichia coli KO11, complete genometranscriptional regulator, CadC3e-0755.8
CP002185:3167738:317860331786033179412810Escherichia coli W, complete genomepredicted transcriptional regulator3e-0755.8
NC_009801:3175714:318519531851953186004810Escherichia coli E24377A, complete genometranscriptional regulatory protein, C terminal3e-0755.8
CU928160:3030324:303980530398053040614810Escherichia coli IAI1 chromosome, complete genomeputative transcriptional regulator3e-0755.8
NC_002655:3769643:377820237782023779011810Escherichia coli O157:H7 EDL933, complete genomeputative sensory transducer3e-0755.8
NC_011748:3196173:320565432056543206463810Escherichia coli 55989, complete genomeputative transcriptional regulator3e-0755.8
CU928145:3196173:320565432056543206463810Escherichia coli 55989 chromosome, complete genomeputative transcriptional regulator3e-0755.8
NC_013008:3761467:377002637700263770835810Escherichia coli O157:H7 str. TW14359 chromosome, complete genometranscriptional regulator3e-0755.8
NC_013361:3867558:387703938770393877848810Escherichia coli O26:H11 str. 11368 chromosome, complete genometranscriptional regulator3e-0755.8
NC_010468:906957:931392931392932201810Escherichia coli ATCC 8739, complete genometranscriptional regulator, CadC2e-0755.8
NC_009800:2995958:300682330068233007632810Escherichia coli HS, complete genometranscriptional regulatory protein, C terminal2e-0755.8
NC_012759:2862807:287367228736722874481810Escherichia coli BW2952 chromosome, complete genomeputative transcriptional regulator3e-0755.8
NC_000913:2975659:298652429865242987333810Escherichia coli K12, complete genomepredicted transcriptional regulator3e-0755.8
NC_010473:3069529:308039430803943081203810Escherichia coli str. K-12 substr. DH10B, complete genomepredicted transcriptional regulator3e-0755.8
AC_000091:2976293:298715829871582987967810Escherichia coli W3110 DNA, complete genomepredicted transcriptional regulator3e-0755.8
NC_013850:4993307:499819349981934998837645Klebsiella variicola At-22 chromosome, complete genometranscriptional regulator, CadC3e-0755.8
NC_016902:903241:926665926665927474810Escherichia coli KO11FL chromosome, complete genometranscriptional regulator CadC3e-0755.8
NC_013941:3540420:354897935489793549788810Escherichia coli O55:H7 str. CB9615 chromosome, complete genomesensory transducer3e-0755.8
NC_013364:3552284:356177135617713562580810Escherichia coli O111:H- str. 11128, complete genomeputative transcriptional regulator3e-0755.8
NC_013956:1994970:200213620021362003050915Pantoea ananatis LMG 20103 chromosome, complete genomeYqeI4e-0755.5
NC_016816:2508204:251985925198592520752894Pantoea ananatis LMG 5342, complete genomeputative transcriptional regulator4e-0755.5
NC_009648:4958500:497541949754194976093675Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomeputative transcriptional regulatory protein3e-0755.5
NC_013353:3474077:348355834835583484367810Escherichia coli O103:H2 str. 12009, complete genometranscriptional regulator9e-0754.3
AP010958:3474077:348355834835583484367810Escherichia coli O103:H2 str. 12009 DNA, complete genomepredicted transcriptional regulator9e-0754.3
NC_009832:4564752:458819245881924588995804Serratia proteamaculans 568, complete genometranscriptional regulator, CadC6e-0651.2
NC_021066:3769405:377676637767663777620855Raoultella ornithinolytica B6, complete genometranscriptional regulator9e-0650.8