Pre_GI: BLASTP Hits

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Query: NC_006512:1942000:1955418 Idiomarina loihiensis L2TR, complete genome

Start: 1955418, End: 1956128, Length: 711

Host Lineage: Idiomarina loihiensis; Idiomarina; Idiomarinaceae; Alteromonadales; Proteobacteria; Bacteria

General Information: This is the type strain for this organism, which was isolated from a hydrothermal vent at a depth of 1300 m from the Lo'ihi Seamount southeast of Hawaii. This organism grows optimally in salt concentrations of 7.5 to 10%. Genome comparison has suggested that the bacterium has maintained its amino acid transport and degradation systems but lost sugar transport and certain sugar metabolic genes suggesting that it lives on amino acids rather than sugars. This may be in keeping with the environment this organism grows in, which is at hydrothermal deep sea vents that are characterized by collections of proteinaceous particles. This organism may colonize these particles by producing exopolysaccharides.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013282:2582720:258593925859392586658720Cronobacter turicensis, complete genomeFatty acid metabolism regulator protein5e-90330
NC_020181:734477:748102748102748821720Enterobacter aerogenes EA1509E, complete genomeTranscriptional regulator for fatty acid degradation FadR, GntR family3e-89328
NC_015663:4735808:473739347373934738112720Enterobacter aerogenes KCTC 2190 chromosome, complete genomefatty acid metabolism regulator3e-89328
NC_020211:2985157:299607529960752996794720Serratia marcescens WW4, complete genomeDNA-binding transcriptional dual regulator of fatty acid metabolism5e-88323
NC_014500:2525880:254282125428212543540720Dickeya dadantii 3937 chromosome, complete genomeDNA-binding transcriptional dual regulator of fatty acid metabolism1e-86319
NC_012912:2285778:228577822857782286497720Dickeya zeae Ech1591, complete genomefatty acid metabolism transcriptional regulator FadR5e-86317
NC_009092:2529518:253350725335072534268762Shewanella loihica PV-4, complete genomefatty acid responsive transcription factor FadR domain protein5e-85313
NC_013166:784339:802018802018802740723Kangiella koreensis DSM 16069, complete genomefatty acid metabolism transcriptional regulator FadR1e-70266
NC_007974:2097334:213197321319732132776804Ralstonia metallidurans CH34 chromosome 2, complete sequenceregulatory protein GntR, HTH5e-1064.7
NC_010676:2720068:273288227328822733655774Burkholderia phytofirmans PsJN chromosome 2, complete sequenceGntR domain protein5e-1064.7
NC_007644:1352794:135436113543611355110750Moorella thermoacetica ATCC 39073, complete genomeregulatory protein GntR, HTH7e-1064.3
NC_013131:9711508:973378897337889734621834Catenulispora acidiphila DSM 44928, complete genomeregulatory protein GntR HTH1e-0963.5
NC_008148:1859888:187784118778411878557717Rubrobacter xylanophilus DSM 9941, complete genomeGntR-like protein2e-0962.8
NC_008148:583030:583030583030583788759Rubrobacter xylanophilus DSM 9941, complete genomeGntR-like protein5e-0961.2
NC_013501:1337489:134428613442861345053768Rhodothermus marinus DSM 4252, complete genomeGntR domain protein6e-0857.8
NC_013526:105195:119507119507120259753Thermobaculum terrenum ATCC BAA-798 chromosome 2, complete genomeGntR domain protein6e-0857.8
NC_014479:2505823:252667125266712527399729Bacillus subtilis subsp. spizizenii str. W23 chromosome, completeGntR family transcriptional regulator9e-0857.4
NC_008544:818730:826049826049826807759Burkholderia cenocepacia HI2424 chromosome 3, complete sequenceGntR domain protein2e-0756.6
NC_008060:1346581:135718313571831357941759Burkholderia cenocepacia AU 1054 chromosome 1, complete sequenceGntR-like2e-0756.6
NC_014550:2562053:256446125644612565135675Arthrobacter arilaitensis Re117, complete genomeputative GntR family transcriptional regulator2e-0756.2
NC_011745:2399313:240125324012532401999747Escherichia coli ED1a chromosome, complete genomeputative DNA-binding transcriptional regulator3e-0755.8
NC_016860:1614280:161428016142801614951672Salmonella enterica subsp. enterica serovar Typhimurium strputative regulatory protein3e-0755.5
NC_016856:1621279:162656716265671627238672Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative regulatory protein3e-0755.5
NC_011094:1584038:158403815840381584709672Salmonella enterica subsp. enterica serovar Schwarzengrund strregulatory protein3e-0755.5
NC_021171:4549673:455230045523004552956657Bacillus sp. 1NLA3E, complete genomeGntR family transcriptional regulator4e-0755.1
NC_015761:1488807:149410414941041494778675Salmonella bongori NCTC 12419, complete genomeregulatory protein4e-0755.1
NC_003198:1463253:147775414777541478545792Salmonella enterica subsp. enterica serovar Typhi str. CT18,putative regulatory protein4e-0755.1
NC_003197:1611302:161647016164701617261792Salmonella typhimurium LT2, complete genomeputative regulatory protein4e-0755.1
NC_007384:2251792:225373222537322254478747Shigella sonnei Ss046, complete genomeputative transcriptional regulator6e-0754.7
NC_002695:2854629:285556828555682856314747Escherichia coli O157:H7 str. Sakai, complete genomeputative transcriptional regulator6e-0754.7
NC_002655:2925787:292578729257872926533747Escherichia coli O157:H7 EDL933, complete genomeputative transcriptional regulator6e-0754.7
AC_000091:2185369:218536921853692186115747Escherichia coli W3110 DNA, complete genomepredicted DNA-binding transcriptional regulator6e-0754.7
CP002185:2347413:235062723506272351373747Escherichia coli W, complete genomepredicted DNA-binding transcriptional regulator6e-0754.7
NC_010473:2267851:227106522710652271811747Escherichia coli str. K-12 substr. DH10B, complete genomepredicted DNA-binding transcriptional regulator6e-0754.7
NC_011740:2737467:274186427418642742535672Escherichia fergusonii ATCC 35469, complete genomeputative gntR family regulatory protein6e-0754.7
CU928160:2239637:224157722415772242323747Escherichia coli IAI1 chromosome, complete genomeputative DNA-binding transcriptional regulator6e-0754.7
NC_010468:1694729:171221617122161712962747Escherichia coli ATCC 8739, complete genometranscriptional regulator, GntR family6e-0754.7
NC_011750:955451:973500973500974246747Escherichia coli IAI39 chromosome, complete genomeputative DNA-binding transcriptional regulator6e-0754.7
NC_017328:2225418:222844922284492229195747Shigella flexneri 2002017 chromosome, complete genomeGntR family transcriptional regulator6e-0754.7
NC_016822:2341127:234306723430672343813747Shigella sonnei 53G, complete genomeGntR family transcriptional regulator6e-0754.7
NC_013008:2851342:285134228513422852088747Escherichia coli O157:H7 str. TW14359 chromosome, complete genomeDNA-binding transcriptional regulator6e-0754.7
NC_012759:2069326:207254020725402073286747Escherichia coli BW2952 chromosome, complete genomeputative DNA-binding transcriptional regulator6e-0754.7
NC_011741:2239637:224157722415772242323747Escherichia coli IAI1 chromosome, complete genomeputative DNA-binding transcriptional regulator6e-0754.7
NC_011353:2852362:285236228523622853108747Escherichia coli O157:H7 str. EC4115 chromosome, complete genomeGntR family transcriptional regulator6e-0754.7
NC_009792:642881:657290657290658036747Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein6e-0754.3
NC_014121:3483976:348848334884833489229747Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completehypothetical protein8e-0753.9
NC_015968:3053565:306949830694983070244747Enterobacter asburiae LF7a chromosome, complete genomeGntR family transcriptional regulator with UTRA sensor domain9e-0753.9
NC_015687:2632557:265543326554332656128696Clostridium acetobutylicum DSM 1731 chromosome, complete genomeFadR family transcriptional regulator1e-0653.9
NC_007519:1244198:125890712589071259602696Desulfovibrio alaskensis G20 chromosome, complete genomeGntR family transcriptional regulator1e-0653.5
NC_003198:2179688:220506222050622205808747Salmonella enterica subsp. enterica serovar Typhi str. CT18,putative gntR-family transcriptional regulator1e-0653.1
NC_011149:2179592:220506922050692205815747Salmonella enterica subsp. enterica serovar Agona str. SL483,transcriptional regulator, GntR family1e-0653.1
NC_006905:2235607:226199722619972262743747Salmonella enterica subsp. enterica serovar Choleraesuis strputative regulatory protein, gntR family1e-0653.1
NC_006582:1297039:1310905131090513123201416Bacillus clausii KSM-K16, complete genometranscriptional regulator, GntR family3e-0652.4
NC_016612:178864:186603186603187319717Klebsiella oxytoca KCTC 1686 chromosome, complete genomeGntR family transcriptional regulator3e-0652
NC_011898:1558208:156763615676361568325690Clostridium cellulolyticum H10, complete genomeGntR domain protein3e-0652
NC_011750:4543135:454554345455434546235693Escherichia coli IAI39 chromosome, complete genomeputative transcriptional regulator6e-0651.2
NC_015733:3923800:392690539269053927591687Pseudomonas putida S16 chromosome, complete genomeGntR family transcriptional regulator7e-0650.8
NC_003063:757999:761406761406762080675Agrobacterium tumefaciens str. C58 chromosome linear, completehypothetical protein7e-0650.8
NC_003305:1297785:131267613126761313407732Agrobacterium tumefaciens str. C58 chromosome linear, completetranscriptional regulator, GntR family7e-0650.8
NC_007963:3553678:356654835665483567216669Chromohalobacter salexigens DSM 3043, complete genometranscriptional regulator, GntR family9e-0650.4