Pre_GI Gene

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Host: NC_003063 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_003063:757999 Agrobacterium tumefaciens str. C58 chromosome linear, complete

Host Lineage: Agrobacterium fabrum; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: This strain is a biovar 1 nopaline-producing strain originally isolated from a cherry tree tumor. Strains of Agrobacterium are classified in three biovars based on their utilisation of different carbohydrates and other biochemical tests. The differences between biovars are determined by genes on the single circle of chromosomal DNA. Biovar differences are not particularly relevant to the pathogenicity of A. tumefaciens, except in one respect: biovar 3 is found worldwide as the pathogen of gravevines. This species causes crown gall disease of a wide range of dicotyledonous (broad-leaved) plants, especially members of the rose family such as apple, pear, peach, cherry, almond, raspberry and roses. Because of the way that it infects other organisms, this bacterium has been used as a tool in plant breeding. Any desired genes, such as insecticidal toxin genes or herbicide-resistance genes, can be engineered into the bacterial DNA, and then inserted into the plant genome. This process shortens the conventional plant breeding process, and allows entirely new (non-plant) genes to be engineered into crops.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
757999758985987hypothetical proteinBLASTP
7590967610451950hypothetical proteinBLASTP
761406762080675hypothetical proteinBLASTP
762037763005969hypothetical proteinBLASTP
762953763933981hypothetical proteinBLASTP
764003764164162hypothetical protein
764765765064300hypothetical proteinBLASTP
767506768039534hypothetical proteinBLASTP
768036768422387hypothetical proteinBLASTP
76844676852176tRNA-AlaQuickGO ontologyBLASTP
7711817731271947hypothetical proteinBLASTP
7731977758602664hypothetical proteinBLASTP
775889776053165hypothetical protein
776186777145960hypothetical proteinBLASTP
777367778236870hypothetical proteinBLASTP
7782337793151083peptide chain release factor 1QuickGO ontologyBLASTP
7793457816122268hypothetical proteinBLASTP
7817887830831296aspartate kinaseQuickGO ontologyBLASTP