Pre_GI Gene

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Host: NC_003305 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_003305:1297785 Agrobacterium tumefaciens str. C58 chromosome linear, complete

Host Lineage: Agrobacterium tumefaciens; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Gram-negative soil bacterium. This is the most widely studied species in the genus. Strains of Agrobacterium are classified in three biovars based on their utilisation of different carbohydrates and other biochemical tests. The differences between biovars are determined by genes on the single circle of chromosomal DNA. Biovar differences are not particularly relevant to the pathogenicity of A. tumefaciens, except in one respect: biovar 3 is found worldwide as the pathogen of gravevines. This species causes crown gall disease of a wide range of dicotyledonous (broad-leaved) plants, especially members of the rose family such as apple, pear, peach, cherry, almond, raspberry and roses. Because of the way that it infects other organisms, this bacterium has been used as a tool in plant breeding. Any desired genes, such as insecticidal toxin genes or herbicide-resistance genes, can be engineered into the bacterial DNA, and then inserted into the plant genome. This process shortens the conventional plant breeding process, and allows entirely new (non-plant) genes to be engineered into crops.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
12977851298570786hypothetical proteinBLASTP
129893513015592625ATP-dependent Clp protease ATP-binding subunitQuickGO ontologyBLASTP
130162913035751947hypothetical proteinBLASTP
13037441304196453hypothetical protein
130430013057911492SSU 16S ribosomal RNAQuickGO ontologyBLASTP
1306100130617980tRNA-IleQuickGO ontologyBLASTP
1306235130631379tRNA-AlaQuickGO ontologyBLASTP
13067171307130414hypothetical proteinBLASTP
130719813094322235SSU 23S ribosomal RNAQuickGO ontologyBLASTP
13096921309991300hypothetical proteinBLASTP
13100631310185123SSU 5S ribosomal RNAQuickGO ontologyBLASTP
1310422131050180tRNA-MetQuickGO ontology
13104771310683207hypothetical protein
13108231311719897dihydropicolinate synthaseQuickGO ontologyBLASTP
13117511312632882calcium-binding protein regucalcinQuickGO ontologyBLASTP
13126761313407732transcriptional regulator GntR familyQuickGO ontologyBLASTP
131369313156601968ABC transporter substrate binding protein oligopeptideQuickGO ontologyBLASTP
131567213167571086ABC transporter membrane spanning protein oligopeptideQuickGO ontologyBLASTP
131676713178911125ABC transporter membrane spanning protein oligopeptideQuickGO ontologyBLASTP
131792013196261707ABC transporter nucleotide bindingATPase protein oligopeptideQuickGO ontologyBLASTP
131967113208581188hypothetical proteinBLASTP
13208361321711876hypothetical proteinBLASTP