Pre_GI: BLASTP Hits

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Query: NC_006155:1191307:1217321 Yersinia pseudotuberculosis IP 32953, complete genome

Start: 1217321, End: 1218472, Length: 1152

Host Lineage: Yersinia pseudotuberculosis; Yersinia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is a fully virulent serotype I strain isolated from a human patient. Environmental bacterium that causes gastrointestinal disease. Specific virulence factors are encoded within pathogenicity islands (PAIs) that are required for the invasive phenotype associated with Yersinia infections. One key virulence plasmid contained by the three human-specific pathogens is pCD1/pYv, which encodes a type III secretion system for the delivery of virulence proteins that contribute to internalization into the host cell. This organism was first isolated in 1883 by Malassez and Vignal and is termed pseudotuberculosis since it causes lesions in the lung that are similar to those observed during tuberculosis infection. It is ubiquitous in the environment and is a food and waterborne pathogen that affects animals as well as humans by causing gastroenteritis like Yersinia enterocolitica.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009708:3411153:3417834341783434189851152Yersinia pseudotuberculosis IP 31758 chromosome, complete genomeferric enterobactin ABC transporter0706
NC_010634:1175404:1199864119986412010151152Yersinia pseudotuberculosis PB1/+, complete genomelipopolysaccharide biosynthesis protein0701
NC_010465:3465351:3472743347274334738941152Yersinia pseudotuberculosis YPIII, complete genomelipopolysaccharide biosynthesis protein0699
NC_010159:1288000:1312163131216313133141152Yersinia pestis Angola, complete genomechain length determinant family protein Wzz0696
NC_005810:872672:8986378986378997881152Yersinia pestis biovar Microtus str. 91001, complete genomeferric enterobactin transport protein FepE0696
NC_003143:3446740:3453810345381034549611152Yersinia pestis CO92, complete genomeO-antigen chain length determinant0696
NC_008150:2878450:2885475288547528866261152Yersinia pestis Antiqua, complete genomeO-antigen chain length determinant0696
NC_009381:3094939:3101963310196331031141152Yersinia pestis Pestoides F chromosome, complete genomeferric enterobactin transport protein FepE0696
NC_017168:2281040:2307105230710523082561152Yersinia pestis A1122 chromosome, complete genomeLPS O-antigen length regulator0696
NC_017265:3240379:3247403324740332485541152Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,O-antigen chain length determinant0692
NC_004088:1196875:1220804122080412219551152Yersinia pestis KIM, complete genomeO-antigen chain length determinant0692
NC_008149:1122693:115015211501521151129978Yersinia pestis Nepal516, complete genomeO-antigen chain length determinant9e-180629
NC_017160:3426486:343316534331653434016852Yersinia pestis D182038 chromosome, complete genomeO-antigen chain length determinant1e-155549
NC_017154:3444497:345117934511793452030852Yersinia pestis D106004 chromosome, complete genomeO-antigen chain length determinant1e-155549
NC_014029:3501500:350821435082143509065852Yersinia pestis Z176003 chromosome, complete genomeO-antigen chain length determinant1e-155549
NC_012962:3933715:3984319398431939854251107Photorhabdus asymbiotica, complete genomeFerric enterobactin transport protein8e-68257
NC_013508:1262333:1277953127795312789991047Edwardsiella tarda EIB202, complete genomeferric enterobactin transport protein3e-51202
NC_008800:3330944:3339012333901233401031092Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,O-antigen chain length determinant9e-50197
NC_012691:2225000:2243045224304522441631119Tolumonas auensis DSM 9187, complete genomelipopolysaccharide biosynthesis protein1e-1584.3
NC_015424:3112637:3121677312167731227831107Aeromonas veronii B565 chromosome, complete genomeO-antigen chain length determinant4e-1582.8
NC_011741:2155947:216070821607082161688981Escherichia coli IAI1 chromosome, complete genomeregulator of length of O-antigen component of lipopolysaccharide chains8e-1168.6
CU928160:2155947:216070821607082161688981Escherichia coli IAI1 chromosome, complete genomeregulator of length of O-antigen component of lipopolysaccharide chains8e-1168.6
NC_011740:2135141:213514121351412136121981Escherichia fergusonii ATCC 35469, complete genomeChain length determinant protein (Polysaccharide antigen chain regulator)9e-1168.2
NC_011601:2211917:221586022158602216837978Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomeregulator of length of O-antigen component of lipopolysaccharide chains3e-1066.6
NC_011745:2302979:2306833230683323078671035Escherichia coli ED1a chromosome, complete genomeregulator of length of O-antigen component of lipopolysaccharide chains7e-1065.5
CU928145:2324495:232835023283502329330981Escherichia coli 55989 chromosome, complete genomeregulator of length of O-antigen component of lipopolysaccharide chains7e-1065.5
NC_011748:2324495:232835023283502329330981Escherichia coli 55989, complete genomeregulator of length of O-antigen component of lipopolysaccharide chains7e-1065.5
NC_010468:1775000:179707217970721798052981Escherichia coli ATCC 8739, complete genomelipopolysaccharide biosynthesis protein7e-1065.5
NC_013361:2848949:285114628511462852123978Escherichia coli O26:H11 str. 11368 chromosome, complete genomeregulator of length of O-antigen component of lipopolysaccharide chains8e-1065.1
NC_006300:600516:6071416071416083311191Mannheimia succiniciproducens MBEL55E, complete genomehypothetical protein1e-0964.7
NC_007613:864084:8668718668718679051035Shigella boydii Sb227, complete genomeregulator of length of O-antigen component of lipopolysaccharide chains1e-0964.7
NC_010658:1090104:1113117111311711141511035Shigella boydii CDC 3083-94, complete genomechain length determinant protein1e-0964.7
NC_009801:2276131:2279985227998522810191035Escherichia coli E24377A, complete genomechain length determinant protein1e-0964.3
NC_002655:2839600:2839600283960028406131014Escherichia coli O157:H7 EDL933, complete genomeregulator of length of O-antigen component of lipopolysaccharide chains2e-0963.9
NC_008563:2182270:2186123218612321871391017Escherichia coli APEC O1, complete genomeregulator of length of O-antigen component of lipopolysaccharide chains2e-0963.9
NC_010498:1035406:105479910547991055779981Escherichia coli SMS-3-5, complete genomechain length determinant protein2e-0963.9
NC_011750:1034919:105902410590241060004981Escherichia coli IAI39 chromosome, complete genomeregulator of length of O-antigen component of lipopolysaccharide chains2e-0963.9
NC_013941:2544569:2549493254949325505301038Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeO-antigen chain length determinant Wzz2e-0963.9
NC_013008:2733203:273320327332032734180978Escherichia coli O157:H7 str. TW14359 chromosome, complete genomeregulator of length of O-antigen component of lipopolysaccharide chains2e-0963.5
NC_011353:2734222:273422227342222735199978Escherichia coli O157:H7 str. EC4115 chromosome, complete genomechain length determinant protein2e-0963.5
NC_002695:2769387:276938727693872770367981Escherichia coli O157:H7 str. Sakai, complete genomeregulator of length of O-antigen component of lipopolysaccharide chains2e-0963.5
AP010958:2504072:250792525079252508902978Escherichia coli O103:H2 str. 12009 DNA, complete genomeregulator of length of O-antigen component of lipopolysaccharide chains4e-0963.2
NC_013353:2504072:250792525079252508902978Escherichia coli O103:H2 str. 12009, complete genomeregulator of length of O-antigen component of lipopolysaccharide chains4e-0963.2
NC_008258:2100646:2105659210565921066721014Shigella flexneri 5 str. 8401, complete genomeregulator of length of O-antigen component of lipopolysaccharide chains3e-0963.2
NC_004337:2098736:2103749210374921047621014Shigella flexneri 2a str. 301, complete genomeregulator of length of O-antigen component of lipopolysaccharide chains3e-0963.2
NC_004741:2081649:2086662208666220876751014Shigella flexneri 2a str. 2457T, complete genomeregulator of length of O-antigen component of lipopolysaccharide chains3e-0963.2
NC_017328:2153083:2158096215809621591091014Shigella flexneri 2002017 chromosome, complete genomeChain length determinant protein3e-0963.2
NC_004431:2383901:2385469238546923864821014Escherichia coli CFT073, complete genomeChain length determinant protein3e-0963.2
NC_007946:2231872:2235818223581822368311014Escherichia coli UTI89, complete genomeregulator of length of O-antigen component of lipopolysaccharide chains3e-0963.2
NC_011415:2346474:235139523513952352372978Escherichia coli SE11 chromosome, complete genomeO-antigen chain length determinant protein3e-0963.2
CP002185:2233732:223592522359252236902978Escherichia coli W, complete genomeO6 antigen polymerase (periplasm)5e-0962.8
NC_016902:1846492:186895318689531869930978Escherichia coli KO11FL chromosome, complete genomelipopolysaccharide biosynthesis protein5e-0962.8
NC_008253:2134110:213567721356772136654978Escherichia coli 536, complete genomechain length determinant protein4e-0962.8
NC_011751:2395882:239982223998222400802981Escherichia coli UMN026 chromosome, complete genomeregulator of length of O-antigen component of lipopolysaccharide chains4e-0962.8
NC_011742:2093503:209743220974322098409978Escherichia coli S88 chromosome, complete genomeregulator of length of O-antigen component of lipopolysaccharide chains4e-0962.8
CP002516:1846492:186895318689531869930978Escherichia coli KO11, complete genomelipopolysaccharide biosynthesis protein5e-0962.8
NC_007606:1999870:2018463201846320194971035Shigella dysenteriae Sd197, complete genomeregulator of length of O-antigen component of lipopolysaccharide chains5e-0962.4
NC_012967:2025127:202732320273232028306984Escherichia coli B str. REL606 chromosome, complete genomeregulator of length of O-antigen component of lipopolysaccharide chains6e-0962
NC_012947:1720732:174570417457041746684981Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completelipopolysaccharide biosynthesis protein6e-0962
NC_012759:1983975:198782819878281988808981Escherichia coli BW2952 chromosome, complete genomeregulator of length of O-antigen component of lipopolysaccharide chains8e-0962
NC_010473:2183567:218635321863532187333981Escherichia coli str. K-12 substr. DH10B, complete genomeregulator of length of O-antigen component of lipopolysaccharide chains8e-0962
NC_000913:2092559:209534520953452096325981Escherichia coli K12, complete genomeregulator of length of O-antigen component of lipopolysaccharide chains8e-0962
AC_000091:2096672:209945820994582100438981Escherichia coli W3110 DNA, complete genomeregulator of length of O-antigen component of lipopolysaccharide chains8e-0962
NC_013716:2255102:226001822600182261004987Citrobacter rodentium ICC168, complete genomechain length determinant protein2e-0860.5
NC_013364:2672837:267558426755842676567984Escherichia coli O111:H- str. 11128, complete genomeregulator of length of O-antigen component of lipopolysaccharide chains8e-0858.5
NC_009792:714953:734440734440735423984Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein1e-0757.8
NC_012125:1693774:171410117141011715078978Salmonella enterica subsp. enterica serovar Paratyphi C strainpolysaccharide chain length regulator2e-0757.4
NC_010102:861860:887990887990888967978Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein2e-0653.9
NC_009436:2836847:283684728368472837845999Enterobacter sp. 638, complete genomelipopolysaccharide biosynthesis protein2e-0653.9
NC_011274:2147427:215126321512632152246984Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91polysaccharide chain length regulator2e-0653.5
NC_016831:854973:882311882311883288978Salmonella enterica subsp. enterica serovar Gallinarum/pullorumpolysaccharide chain length regulator2e-0653.5
NC_011294:2156425:216026121602612161244984Salmonella enterica subsp. enterica serovar Enteritidis strpolysaccharide chain length regulator2e-0653.5
NC_020260:1184174:120322312032231204215993Cronobacter sakazakii Sp291, complete genomechain length determinant protein WzzB5e-0652.4
NC_009778:1141716:1161724116172411627341011Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein5e-0652.4
NC_006511:854785:887812887812888789978Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCpolysaccharide chain length regulator7e-0652
NC_011147:854730:881987881987882964978Salmonella enterica subsp. enterica serovar Paratyphi A strpolysaccharide chain length regulator7e-0652
NC_011094:2172271:217611021761102177093984Salmonella enterica subsp. enterica serovar Schwarzengrund strchain length determinant protein6e-0652
NC_011205:2283438:228727622872762288259984Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853chain length determinant protein1e-0551.6
NC_016810:2150709:215454721545472155530984Salmonella enterica subsp. enterica serovar Typhimurium strpolysaccharide chain length regulator1e-0551.6
NC_016856:2204546:220838422083842209367984Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Slipopolysaccharide O-antigen chain length regulator1e-0551.6
NC_016857:2150709:215454721545472155530984Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74lipopolysaccharide O-antigen chain length regulator1e-0551.6
NC_016860:2148535:215237321523732153356984Salmonella enterica subsp. enterica serovar Typhimurium strchain length determinant protein1e-0551.6
NC_016863:2152739:215657721565772157560984Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1lipopolysaccharide O-antigen chain length regulator1e-0551.6
NC_011083:2200613:220445122044512205428978Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,chain length determinant protein9e-0651.6
NC_017046:2150072:215391021539102154887978Salmonella enterica subsp. enterica serovar Typhimurium str. 798polysaccharide chain length regulator9e-0651.6
NC_014121:3399685:340348234034823404462981Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completechain length determinant protein9e-0651.6
NC_003197:2152994:215683221568322157815984Salmonella typhimurium LT2, complete genomelipopolysaccharide O-antigen chain length regulator1e-0551.6