Pre_GI: BLASTP Hits

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Query: NC_005126:4333767:4353945 Photorhabdus luminescens subsp. laumondii TTO1, complete genome

Start: 4353945, End: 4354283, Length: 339

Host Lineage: Photorhabdus luminescens; Photorhabdus; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated on Trinidad and Tobago. It is a symbiont of the nematode Heterorhabditis bacteriophora. Bioluminescent bacterium. This organism is unusual in that it is symbiotic within one insect, and pathogenic in another, the only organism that is known to exhibit this dual phenotype. Enzymes are then released by the bacteria that result in rapid degradation of the insect body, allowing both bacteria and nematode to feed and reproduce. During this period Photorhabdus luminescens releases bacteriocidal products, including antibiotics and bacteriocins, that prevent infection of the larva by competitive microbes. The result is promotion of Photorhabdus luminescens-nematode interactions that result in continuation of the symbiotic relationship. In order to engage in a symbiotic relationship with the nematode and a pathogenic one with the insect larva, the bacterium encodes specific factors that encourage both. These include a large number of genes that code for secreted toxins and enzymes, as well as genes that encode products for the production of antibiotics and bacteriocins. Secretion of these products occurs by an array of systems including type I, type II, and type III secretion systems. The type III system is closely related to the Yersinia plasmid-encoded type III system. Genes that promote symbiotic relationships are also encoded on genomic islands on the chromosome including some that affect nematode development. Virulence genes appear to be active during exponential growth. Symbiotic genes appear to function during stationary phase (post-exponential) growth. The switch from one state to another is controlled. Photorhabdus luminescens is capable of giving off light, a complex process that requires the products of the lux operon.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_005126:4333767:434657743465774346915339Photorhabdus luminescens subsp. laumondii TTO1, complete genomehypothetical protein3e-61233
NC_005126:1613818:162726016272601627598339Photorhabdus luminescens subsp. laumondii TTO1, complete genomehypothetical protein3e-61233
NC_005126:1265071:130947513094751309813339Photorhabdus luminescens subsp. laumondii TTO1, complete genomehypothetical protein3e-61233
NC_014228:2883500:289160828916082891979372Xenorhabdus nematophila ATCC 19061, complete genomeputative Cryptic phage CTXphi transcriptional repressor rstR2e-57220
NC_014228:2883500:289875728987572899128372Xenorhabdus nematophila ATCC 19061, complete genomeputative Cryptic phage CTXphi transcriptional repressor rstR2e-57220
NC_005126:4333767:437298043729804373342363Photorhabdus luminescens subsp. laumondii TTO1, complete genomehypothetical protein3e-25114
NC_005126:4333767:436409043640904364452363Photorhabdus luminescens subsp. laumondii TTO1, complete genomehypothetical protein3e-25114
NC_002505:1550108:156602715660271566365339Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, completetranscriptional repressor RstR4e-1476.6
NC_002505:1550108:157294315729431573281339Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, completetranscriptional repressor RstR4e-1476.6
NC_016445:1027143:104721810472181047556339Vibrio cholerae O1 str. 2010EL-1786 chromosome 1, completetranscriptional repressor RstR4e-1476.6
NC_016445:1027143:104994310499431050281339Vibrio cholerae O1 str. 2010EL-1786 chromosome 1, completetranscriptional repressor RstR4e-1476.6
NC_016944:1547176:156305615630561563394339Vibrio cholerae IEC224 chromosome I, complete sequencetranscriptional repressor RstR4e-1476.6
NC_016944:1547176:156996915699691570307339Vibrio cholerae IEC224 chromosome I, complete sequencetranscriptional repressor RstR4e-1476.6
NC_009656:44500:606316063161047417Pseudomonas aeruginosa PA7 chromosome, complete genomeputative transcriptional regulator8e-1372.4
NC_002516:42914:624036240362786384Pseudomonas aeruginosa PAO1, complete genomeprobable transcriptional regulator6e-1269.7
NC_018080:42897:622646226462647384Pseudomonas aeruginosa DK2 chromosome, complete genometranscriptional regulator6e-1269.3
NC_011770:42901:622086220862591384Pseudomonas aeruginosa LESB58, complete genomeputative transcriptional regulator1e-1168.6
NC_004129:195347:205065205065205427363Pseudomonas fluorescens Pf-5, complete genomeDNA-binding protein, putative6e-0959.7
NC_013892:1272448:128399912839991284364366Xenorhabdus bovienii SS-2004 chromosome, complete genomeDNA-binding protein2e-0857.4
NC_012912:2174183:219374621937462194132387Dickeya zeae Ech1591, complete genometranscriptional regulator, XRE family5e-0856.6
NC_012962:1068102:110425111042511104643393Photorhabdus asymbiotica, complete genomehypothetical protein6e-0856.2
NC_012962:1068102:108196210819621082354393Photorhabdus asymbiotica, complete genomeputative phage regulatory protein6e-0856.2
NC_008542:1021848:103003110300311030429399Burkholderia cenocepacia HI2424 chromosome 1, complete sequencetranscriptional regulator, XRE family1e-0755.1
NC_014657:2127500:214037221403722140905534Caldicellulosiruptor owensensis OL chromosome, complete genomehelix-turn-helix domain protein2e-0754.7
NC_004088:266543:277204277204277692489Yersinia pestis KIM, complete genometranscriptional repressor3e-0753.9
NC_005810:4469156:448001144800114480499489Yersinia pestis biovar Microtus str. 91001, complete genomeputative transcriptional regulatory protein3e-0753.9
NC_009801:2193000:221593622159362216331396Escherichia coli E24377A, complete genomeputative transcriptional regulator DicA3e-0753.5
NC_008149:4053363:406410640641064064513408Yersinia pestis Nepal516, complete genometranscriptional regulatory protein3e-0753.5
NC_003143:4006884:402561340256134026020408Yersinia pestis CO92, complete genomeputative transcriptional regulatory protein3e-0753.5
NC_006155:4302826:430538543053854305792408Yersinia pseudotuberculosis IP 32953, complete genomeputative transcriptional regulatory protein3e-0753.5
NC_009381:222735:241443241443241850408Yersinia pestis Pestoides F chromosome, complete genometranscriptional regulatory protein3e-0753.5
NC_014029:3958811:397754039775403977947408Yersinia pestis Z176003 chromosome, complete genomeputative transcriptional regulatory protein3e-0753.5
NC_017154:3898925:391765439176543918061408Yersinia pestis D106004 chromosome, complete genometranscriptional regulator3e-0753.5
NC_017160:4073611:408435440843544084761408Yersinia pestis D182038 chromosome, complete genometranscriptional regulator3e-0753.5
NC_017168:1631052:164978116497811650188408Yersinia pestis A1122 chromosome, complete genomeputative transcriptional regulator3e-0753.5
NC_017265:4265659:426821842682184268625408Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,transcriptional regulator3e-0753.5
NC_021175:2063611:207187220718722072216345Streptococcus oligofermentans AS 1.3089, complete genomeCro/CI family transcriptional regulator8e-0752.4
NC_003212:57061:785057850578981477Listeria innocua Clip11262, complete genomehypothetical protein2e-0651.6
NC_013205:526281:535213535213535704492Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446,transcriptional regulator, XRE family1e-0651.6
NC_014538:2158131:218091821809182181331414Thermoanaerobacter sp. X513 chromosome, complete genomehelix-turn-helix domain-containing protein6e-0649.7
NC_014976:684000:685892685892686242351Bacillus subtilis BSn5 chromosome, complete genomeputative Xre family transcriptional regulator7e-0649.3
NC_012667:839318:858206858206858550345Vibrio cholerae MJ-1236 chromosome 2, complete genomecryptic phage CTXphi transcriptional repressor RstR8e-0648.9
NC_012583:683887:702423702423702758336Vibrio cholerae O395 chromosome chromosome II, complete sequencecryptic phage CTXphi transcriptional repressor RstR, classical9e-0648.9
NC_009456:557962:561184561184561519336Vibrio cholerae O395 chromosome 1, complete sequencecryptic phage CTXphi transcriptional repressor RstR9e-0648.9