Pre_GI: BLASTP Hits

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Query: NC_017986:4091051:4097376 Pseudomonas putida ND6 chromosome, complete genome

Start: 4097376, End: 4098647, Length: 1272

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015410:2351464:2364894236489423660601167Pseudomonas mendocina NK-01 chromosome, complete genomephage integrase1e-54213
NC_007963:1552761:1553528155352815546941167Chromohalobacter salexigens DSM 3043, complete genomephage integrase3e-48192
NC_021066:2226826:2249897224989722511861290Raoultella ornithinolytica B6, complete genomeInt protein2e-42174
NC_011415:2153243:2166033216603321673461314Escherichia coli SE11 chromosome, complete genomephage integrase3e-40166
NC_010943:1938136:1947488194748819486631176Stenotrophomonas maltophilia K279a, complete genomeputative phage integrase protein5e-40165
NC_014965:2200974:2207072220707222083791308Vibrio vulnificus MO6-24/O chromosome I, complete sequencehypothetical protein5e-37155
NC_015731:2811579:2817781281778128188661086Nitrosomonas sp. Is79A3 chromosome, complete genomeintegrase family protein9e-37154
NC_009801:1756610:1777435177743517787151281Escherichia coli E24377A, complete genomesite-specific recombinase, phage integrase family1e-35150
NC_012559:854507:8724628724628737121251Laribacter hongkongensis HLHK9, complete genomePhage integrase4e-35149
NC_009832:2460027:2464528246452824658141287Serratia proteamaculans 568, complete genomeintegrase family protein1e-34147
NC_009648:1541699:1542683154268315439211239Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomeputative transposase/integrase2e-34146
NC_016612:3314846:3318797331879733200831287Klebsiella oxytoca KCTC 1686 chromosome, complete genomehypothetical protein3e-34146
NC_013364:1183000:1183584118358411848941311Escherichia coli O111:H- str. 11128, complete genomeputative integrase3e-34146
NC_004603:2235142:2246231224623122473431113Vibrio parahaemolyticus RIMD 2210633 chromosome I, completeputative pore-forming cytotoxin integrase8e-34145
NC_013361:1558423:1558998155899815603081311Escherichia coli O26:H11 str. 11368 chromosome, complete genomeintegrase6e-34145
CP002516:2305659:2306866230686623081461281Escherichia coli KO11, complete genomeintegrase family protein5e-34145
NC_016902:2305659:2306866230686623081461281Escherichia coli KO11FL chromosome, complete genomeintegrase family protein5e-34145
NC_020260:1615135:1619923161992316212061284Cronobacter sakazakii Sp291, complete genomehypothetical protein4e-34145
NC_009778:1556222:1561010156101015622931284Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein4e-33142
NC_015740:2998500:300989430098943010136243Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, completeintegrase family protein2e-32140
NC_014121:2745097:2759664275966427609561293Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completehypothetical protein4e-32139
NC_000913:1404000:1410024141002414112591236Escherichia coli K12, complete genomeRac prophage; integrase9e-32138
CP002185:1493280:1500539150053915017741236Escherichia coli W, complete genomeRac prophage; integrase9e-32138
AC_000091:1407693:1413714141371414149491236Escherichia coli W3110 DNA, complete genomeintegrase9e-32138
CP002516:2580774:2604076260407626053111236Escherichia coli KO11, complete genomeintegrase family protein9e-32138
NC_010473:1493983:1499420149942015006551236Escherichia coli str. K-12 substr. DH10B, complete genomeRac prophage integrase9e-32138
NC_011415:1472500:1475428147542814766631236Escherichia coli SE11 chromosome, complete genomeputative phage integrase9e-32138
NC_012759:1296000:1302083130208313033181236Escherichia coli BW2952 chromosome, complete genomeRac prophage; integrase9e-32138
NC_016902:2580774:2604076260407626053111236Escherichia coli KO11FL chromosome, complete genomeintegrase family protein9e-32138
NC_012947:2366000:2383979238397923852141236Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeintegrase7e-32138
NC_012967:1403733:1409170140917014104051236Escherichia coli B str. REL606 chromosome, complete genomeintegrase7e-32138
NC_015663:4767443:4791802479180247930821281Enterobacter aerogenes KCTC 2190 chromosome, complete genomeputative phage integrase4e-30132
NC_013850:2182337:2184415218441521856621248Klebsiella variicola At-22 chromosome, complete genomeintegrase family protein2e-29130
NC_010102:1829357:1836497183649718377891293Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein2e-29130
NC_016514:2387312:2410532241053224118181287Enterobacter cloacae EcWSU1 chromosome, complete genomelambdoid prophage Rac integrase1e-29130
AC_000091:1627049:1653226165322616544221197Escherichia coli W3110 DNA, complete genomepredicted defective integrase3e-29129
NC_000913:1625500:1649536164953616507321197Escherichia coli K12, complete genomeQin prophage; predicted defective integrase3e-29129
NC_020181:5130513:5161985516198551631511167Enterobacter aerogenes EA1509E, complete genomePhage integrase1e-28128
NC_011742:2863316:2872287287228728734591173Escherichia coli S88 chromosome, complete genomehypothetical protein3e-28126
NC_008563:2946391:2954976295497629561481173Escherichia coli APEC O1, complete genomehypothetical protein3e-28126
NC_007946:2931364:2939949293994929411211173Escherichia coli UTI89, complete genomehypothetical protein3e-28126
NC_015733:2720183:2744616274461627458001185Pseudomonas putida S16 chromosome, complete genomephage integrase3e-28126
NC_013716:2764550:2771293277129327724591167Citrobacter rodentium ICC168, complete genomeputative phage integrase4e-27122
NC_004129:2034500:204479720447972045261465Pseudomonas fluorescens Pf-5, complete genomeintegrase6e-25115
NC_016816:1970189:1974554197455419757321179Pantoea ananatis LMG 5342, complete genomesite-specific recombinase, phage integrase family8e-25115
NC_014922:1360000:1373300137330013744451146Haemophilus influenzae F3047 chromosome, complete genomehypothetical protein1e-24114
NC_014500:842493:8599108599108610851176Dickeya dadantii 3937 chromosome, complete genomeIntegrase2e-24114
NC_010322:1336231:1341043134104313422961254Pseudomonas putida GB-1 chromosome, complete genomeintegrase family protein2e-24113
NC_013446:1724000:1738058173805817392421185Comamonas testosteroni CNB-2, complete genomephage integrase2e-24113
NC_013361:3651150:3656440365644036576151176Escherichia coli O26:H11 str. 11368 chromosome, complete genomeintegrase2e-23110
NC_010645:1496816:1496816149681614979341119Bordetella avium 197N, complete genomephage integrase1e-23110
NC_013941:3300000:3310496331049633116801185Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehypothetical protein3e-22106
NC_020063:2449554:2464493246449324655031011Enterobacteriaceae bacterium strain FGI 57, complete genome4e-22106
NC_002927:3716894:3762261376226137634841224Bordetella bronchiseptica RB50, complete genomephage integrase1e-21104
NC_008570:2216736:2223672222367222248021131Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genome4e-21102
NC_012917:2641000:265608626560862656853768Pectobacterium carotovorum subsp. carotovorum PC1, complete genomeintegrase family protein3e-2099.8
NC_007575:973559:9778509778509790311182Sulfurimonas denitrificans DSM 1251, complete genomePhage integrase5e-1892.4
NC_012108:2159230:2163721216372121648811161Desulfobacterium autotrophicum HRM2, complete genomepredicted bacteriophage P4 integrase2e-1687.4
NC_019960:1658657:1729657172965717309011245Prevotella dentalis DSM 3688 chromosome 1, complete sequencesite-specific recombinase XerD8e-1582
NC_015554:1215401:1226362122636212274861125Alteromonas sp. SN2 chromosome, complete genomephage integrase family protein1e-1378.2
NC_007650:2429307:244248324424832443055573Burkholderia thailandensis E264 chromosome II, complete sequencebacteriophage integrase family protein1e-1377.8
NC_008577:2402165:2417021241702124182441224Shewanella sp. ANA-3 chromosome 1, complete sequencephage integrase family protein4e-1376.3
NC_013971:1927510:193987019398701940574705Erwinia amylovora ATCC 49946 chromosome, complete genomeintegrase (partial)4e-1376.3
NC_013961:1891000:190234319023431903047705Erwinia amylovora, complete genomeTransposase A from transposon Tn5544e-1376.3
NC_017372:1212000:1218489121848912196371149Helicobacter pylori India7 chromosome, complete genomebacteriophage-related integrase5e-1376.3
NC_016048:3983500:3997359399735939985821224Oscillibacter valericigenes Sjm18-20, complete genomeputative site-specific recombinase9e-1375.1
NC_009524:861500:8670058670058682101206Psychrobacter sp. PRwf-1 chromosome, complete genomephage integrase family protein9e-1375.1
NC_009438:2058566:206470520647052064905201Shewanella putrefaciens CN-32 chromosome, complete genome9e-1375.1
NC_016625:1259778:1271811127181112730371227Burkholderia sp. YI23 chromosome 2, complete sequenceBbp501e-1274.7
NC_013889:1202385:1215812121581212170501239Thioalkalivibrio sp. K90mix chromosome, complete genomeintegrase family protein1e-1274.3
NC_009943:305854:3313733313733325841212Candidatus Desulfococcus oleovorans Hxd3, complete genomeintegrase family protein2e-1273.9
NC_009052:2683447:2697891269789126990691179Shewanella baltica OS155, complete genomephage integrase family protein3e-1273.6
NC_010814:3048441:3064888306488830660631176Geobacter lovleyi SZ, complete genomeintegrase family protein7e-1272
NC_011663:2517793:2535804253580425370271224Shewanella baltica OS223 chromosome, complete genomeintegrase family protein2e-1170.9
NC_008577:2818546:2835885283588528370631179Shewanella sp. ANA-3 chromosome 1, complete sequencephage integrase family protein2e-1170.9
NC_005090:1033746:1040696104069610419461251Wolinella succinogenes DSM 1740, complete genomehypothetical protein2e-1170.5
NC_013921:1396500:1398270139827013994661197Thermoanaerobacter italicus Ab9 chromosome, complete genomeintegrase family protein1e-1068.2
NC_016830:5031819:5047281504728150484891209Pseudomonas fluorescens F113 chromosome, complete genomephage integrase1e-1068.2
NC_016906:3006748:3015270301527030166671398Gordonia polyisoprenivorans VH2 chromosome, complete genomephage integrase2e-1067.8
NC_007298:1418500:1441002144100214422371236Dechloromonas aromatica RCB, complete genomePhage integrase2e-1067.8
NC_015757:2459424:2470235247023524714071173Sulfobacillus acidophilus TPY chromosome, complete genomePhage integrase2e-1067.4
NC_016884:1201868:1206857120685712080291173Sulfobacillus acidophilus DSM 10332 chromosome, complete genomeintegrase family protein2e-1067.4
NC_012691:1743038:1765544176554417667251182Tolumonas auensis DSM 9187, complete genomeintegrase family protein2e-1067.4
NC_011768:1718869:1778114177811417793671254Desulfatibacillum alkenivorans AK-01, complete genomeintegrase family protein3e-1066.6
NC_014815:841484:8783238783238795971275Micromonospora sp. L5 chromosome, complete genomeintegrase family protein1e-0965.1
NC_009715:873280:892465892465893295831Campylobacter curvus 525.92 chromosome, complete genomeATP synthase C chain3e-0963.5
NC_017358:182854:2137052137052148501146Helicobacter pylori Cuz20 chromosome, complete genomebacteriophage-related integrase5e-0962.8
NC_007644:1847000:1850618185061818517901173Moorella thermoacetica ATCC 39073, complete genomePhage integrase6e-0962.4
NC_016948:678939:6847016847016858551155Mycobacterium intracellulare MOTT-64 chromosome, complete genomeprophage integrase6e-0962.4
NC_014355:4151798:4167771416777141690841314Candidatus Nitrospira defluvii, complete genomeputative phage integrase8e-0962
NC_008229:1397361:1397361139736113984971137Helicobacter acinonychis str. Sheeba, complete genomebacteriophage-related integrase9e-0962
NC_007760:4055860:408811340881134088940828Anaeromyxobacter dehalogenans 2CP-C, complete genomePhage integrase2e-0860.5
NC_014762:2428721:2441079244107924422511173Sulfuricurvum kujiense DSM 16994 chromosome, complete genomeintegrase family protein2e-0860.5
NC_008148:2231045:2231045223104522321811137Rubrobacter xylanophilus DSM 9941, complete genomephage integrase2e-0860.5
NC_014624:370030:3768543768543779331080Eubacterium limosum KIST612 chromosome, complete genomehypothetical protein3e-0860.1
NC_015275:1034230:1035408103540810366311224Clostridium lentocellum DSM 5427 chromosome, complete genomeintegrase family protein4e-0859.7
NC_016048:184500:2259682259682271161149Oscillibacter valericigenes Sjm18-20, complete genomeputative site-specific recombinase7e-0858.9
NC_015311:2626850:2634215263421526353181104Prevotella denticola F0289 chromosome, complete genome1e-0758.2
NC_013361:2169948:216994821699482170211264Escherichia coli O26:H11 str. 11368 chromosome, complete genomeC-terminus fragment integrase1e-0757.8
NC_015576:808926:8197348197348209031170Mycobacterium sp. JDM601 chromosome, complete genomeprophage integrase2e-0757.4
NC_014650:603500:6101966101966113951200Geobacillus sp. Y4.1MC1 chromosome, complete genomeintegrase3e-0756.6
NC_007948:360199:3852723852723866871416Polaromonas sp. JS666, complete genomephage integrase3e-0756.6
NC_018750:5293829:5316938531693853180921155Streptomyces venezuelae ATCC 10712, complete genomephage integrase family protein7e-0755.5
NC_010572:4181403:4204639420463942059101272Streptomyces griseus subsp. griseus NBRC 13350, complete genomeputative phage integrase7e-0755.5
NC_015737:2691246:2720265272026527213951131Clostridium sp. SY8519, complete genomehypothetical protein9e-0755.1
NC_008525:1013979:1029975102997510310481074Pediococcus pentosaceus ATCC 25745, complete genomeIntegrase9e-0755.1
NC_009328:814530:8199338199338210961164Geobacillus thermodenitrificans NG80-2 chromosome, complete genomeDNA integration/recombination/invertion protein2e-0653.9
NC_014136:329484:3585733585733596371065Leuconostoc kimchii IMSNU11154 chromosome, complete genomephage family integrase2e-0653.9
NC_003888:6103534:6133491613349161357972307Streptomyces coelicolor A3(2), complete genometraSA:integrase fusion protein4e-0653.1
NC_014814:483444:4965664965664977531188Mycobacterium sp. Spyr1 chromosome, complete genomesite-specific recombinase XerD4e-0653.1
NC_008699:1132790:1159085115908511602361152Nocardioides sp. JS614, complete genomephage integrase family protein4e-0653.1
NC_017190:3166000:3179409317940931805661158Bacillus amyloliquefaciens LL3 chromosome, complete genometyrosine recombinase XerC3e-0653.1
NC_000964:521975:5290665290665301721107Bacillus subtilis subsp. subtilis str. 168, complete genomehypothetical protein5e-0652.8
NC_013235:508585:5258015258015269161116Nakamurella multipartita DSM 44233, complete genomeintegrase family protein5e-0652.8
NC_005835:1773482:1778579177857917797571179Thermus thermophilus HB27, complete genomeDNA integration/recombination/invertion protein5e-0652.8
NC_016048:1602500:161679916167991617647849Oscillibacter valericigenes Sjm18-20, complete genomeputative site-specific recombinase7e-0652.4
NC_008711:1892881:190429619042961905210915Arthrobacter aurescens TC1, complete genomephage integrase family domain protein8e-0652