Pre_GI Gene

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Host: NC_010322 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_010322:1336231 Pseudomonas putida GB-1 chromosome, complete genome

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Pseudomonas putida strain GB-1, a fresh water, Gram-negative gamma-proteobacterium, is a genetically tractable, robust manganese (Mn) oxidizer, and as such, is an ideal model for unraveling the catalytic mechanism for, and the molecular regulation of Mn(IV) oxide production and its eventual accumulation on the cell surface at the onset of stationary phase. Since its isolation from Green Bay nearly 20 years ago by Ken Nealson’s group (then at the Center for Great Lakes Studies, Univ. Wisconsin-Milwaukee, USA), it has been the non spore-forming, model organism (along with the closely-related strain MnB1) for molecular genetic studies of Mn(II) oxidization, protein transport and biofilm formation and for biochemical studies on protein purification and Mn(III)-pyoverdine binding. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
133623113365543244Fe-4S ferredoxinQuickGO ontologyBLASTP
133669513393372643DNA mismatch repair protein MutSQuickGO ontologyBLASTP
133948213405011020hypothetical protein
134104313422961254integrase family proteinQuickGO ontologyBLASTP
13422661342460195putative phage excisionaseQuickGO ontologyBLASTP
13424571343071615hypothetical proteinBLASTP
13434461343646201hypothetical proteinBLASTP
134364313453221680C-5 cytosine-specific DNA methylaseQuickGO ontologyBLASTP
13455701346067498hypothetical proteinBLASTP
13461511346399249transcriptional regulator PrtNQuickGO ontologyBLASTP
13472071347911705putative phage repressorQuickGO ontologyBLASTP
13480091348233225hypothetical proteinBLASTP
13483631348851489hypothetical proteinBLASTP
134904413518062763bifunctional DNA primasepolymeraseQuickGO ontologyBLASTP
13521311352682552hypothetical proteinBLASTP
13528871353234348pyocin R2_PP holinQuickGO ontologyBLASTP
13533951353976582hypothetical proteinBLASTP
135398113560232043terminase GpAQuickGO ontologyBLASTP