Pre_GI Gene

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Host: NC_009438 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_009438:2058566 Shewanella putrefaciens CN-32 chromosome, complete genome

Host Lineage: Shewanella putrefaciens; Shewanella; Shewanellaceae; Alteromonadales; Proteobacteria; Bacteria

General Information: Shewanella putrefaciens is a Gram-negative bacterium. It has been isolated from marine environments, as well as from anaerobic sandstone in the Morrison formation in New Mexico, USA. S. putrefaciens is also a facultative anaerobe with the ability to reduce iron and manganese metabolically; that is, it can use iron and manganese as the terminal electron acceptor in the electron transport chain (in contrast to obligate aerobes which must use oxygen for this purpose). It is also one of the organisms associated with the odor of rotting fish, as it is a marine organism which produces trimethylamines (hence the species name putrefaciens, from putrid). This genus includes species that inhabit a wide range of environments and are capable of utilizing a wide variety of electron acceptors during anaerobic respiration including some insoluble metal oxides while using very few carbon sources such as lactate or acetate. This group of organisms have been studied extensively for their electron transport systems. This species, along with Shewanella algae, are the only Shewanella spp. to be found in clinical speciments. Normally found in marine environments in warmer temperatures, infections seem to occur more frequently in countries with a warm climate and in other countries during warm summer months.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
205856620611782613bifunctional acetaldehyde-CoAalcohol dehydrogenaseQuickGO ontologyBLASTP
20614962062128633hypothetical proteinBLASTP
206238520643791995methyl-accepting chemotaxis sensory transducerQuickGO ontologyBLASTP
206507220662201149major facilitator superfamily transporterQuickGO ontologyBLASTP
206622320674401218major facilitator superfamily transporterQuickGO ontologyBLASTP
206743720686301194beta-lactamaseQuickGO ontologyBLASTP
20687672069660894LysR family transcriptional regulatorQuickGO ontologyBLASTP
20701032071080978CRISPR-associated Cas1 family proteinQuickGO ontologyBLASTP
207109320740292937DEADDEAH box helicaseQuickGO ontologyBLASTP
20740332074980948hypothetical protein
207498920759991011hypothetical protein
20760082076559552CRISPR-associated Csy4 family proteinQuickGO ontologyBLASTP