Pre_GI: BLASTP Hits

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Query: NC_017328:3289853:3311322 Shigella flexneri 2002017 chromosome, complete genome

Start: 3311322, End: 3312779, Length: 1458

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections. This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. Human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. Extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_004337:3249791:327202832720283272837810Shigella flexneri 2a str. 301, complete genomeputative transport enzyme subunit7e-116417
NC_012967:3191319:321439832143983215276879Escherichia coli B str. REL606 chromosome, complete genomePTS system, N-acetylgalactosamine-specific IID component2e-114412
CP002185:3475991:349917434991743500052879Escherichia coli W, complete genomeN-acetylgalactosamine-specific IID component3e-114412
NC_004337:3249791:327125932712593272038780Shigella flexneri 2a str. 301, complete genomeN-acetylgalactosameine-specific IIC component 21e-94347
NC_012967:3191319:321362932136293214408780Escherichia coli B str. REL606 chromosome, complete genomeN-acetylgalactosamine-specific PTS system transporter subunit IIC4e-93342
CP002185:3475991:349840534984053499184780Escherichia coli W, complete genomeN-acetylgalactosamine-specific IIC component4e-93342
NC_005126:949226:968992968992969885894Photorhabdus luminescens subsp. laumondii TTO1, complete genomePTS system, N-acetylgalactosamine-specific IID component (EIID-AGA) (N-acetylgalactosamine-permease IID component) (Phosphotransferase enzyme II, D co1e-67257
NC_012962:869295:883460883460884302843Photorhabdus asymbiotica, complete genomepts system, n-acetylgalactosamine-specific iid component (eiid-aga (n-acetylgalactosamine-permease iid component) (phosphotransferas enzyme ii, d comp2e-65249
NC_012962:869295:882634882634883419786Photorhabdus asymbiotica, complete genomepts system, n-acetylgalactosamine-specific iic component 1 (eiic-aga (n-acetylgalactosamine-permease iic component 1)2e-50200
NC_005362:1870620:187627718762771877206930Lactobacillus johnsonii NCC 533, complete genomephosphoenolpyruvate-dependent sugar phosphotransferase system EIID probable mannose specific9e-39161
NC_008530:1775841:178007817800781781007930Lactobacillus gasseri ATCC 33323, complete genomemannose-specific PTS system component IID1e-38161
NC_013504:1648551:165526816552681656197930Lactobacillus johnsonii FI9785 chromosome, complete genomephosphoenolpyruvate-dependent sugar phosphotransferase system EIID, probably mannose specific4e-38159
NC_010067:1116148:112641511264151127305891Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein3e-38159
NC_011660:2509362:251640625164062517317912Listeria monocytogenes HCC23 chromosome, complete genomePTS system fructose-specific transporter subunit IID1e-37157
NC_018528:1681060:168733116873311688251921Lactobacillus helveticus R0052 chromosome, complete genomePTS system mannose family transporter subunit IID1e-37157
NC_006814:403723:441344441344442282939Lactobacillus acidophilus NCFM, complete genomemannose-specific PTS system component IID7e-37155
AC_000091:3258377:328055632805563280957402Escherichia coli W3110 DNA, complete genome6e-37155
NC_010473:3354052:337646833764683376869402Escherichia coli str. K-12 substr. DH10B, complete genome6e-37155
NC_015602:1339067:134426113442611345181921Lactobacillus kefiranofaciens ZW3 chromosome, complete genomePTS system, mannose-specific IID component2e-36154
NC_015975:1936504:195040519504051951319915Lactobacillus ruminis ATCC 27782 chromosome, complete genomePTS family mannose/fructose/sorbose porter component IID3e-36153
NC_014334:2696000:2706521270652127082151695Lactobacillus casei str. Zhang chromosome, complete genomePTS system mannose-specific transporter subunit IICD6e-36152
NC_015214:437733:476722476722477642921Lactobacillus acidophilus 30SC chromosome, complete genomePTS system, mannose-specific IID component5e-36152
NC_014106:419511:452561452561453481921Lactobacillus crispatus ST1, complete genomePTS system, mannose-specific IID component5e-36152
NC_014724:439594:477107477107478027921Lactobacillus amylovorus GRL 1112 chromosome, complete genomePTS system, mannose-specific IID component4e-36152
NC_011294:4604283:462884346288434629679837Salmonella enterica subsp. enterica serovar Enteritidis strPTS system transporter subunit D6e-35149
NC_005139:518760:527148527148528032885Vibrio vulnificus YJ016 chromosome I, complete sequencephosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID8e-35148
NC_005139:518760:526385526385527158774Vibrio vulnificus YJ016 chromosome I, complete sequencephosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC3e-34146
NC_010723:1379256:139967813996781400622945Clostridium botulinum E3 str. Alaska E43, complete genomePTS system, mannose/fructose/sorbose family, IID component8e-34145
NC_014376:4369666:437043543704354371226792Clostridium saccharolyticum WM1 chromosome, complete genomePTS system mannose/fructose/sorbose family IID component6e-34145
NC_008261:967973:970981970981971892912Clostridium perfringens ATCC 13124, complete genomePTS system, mannose/fructose/sorbose family, IID component1e-33144
NC_013192:469771:483533483533484450918Leptotrichia buccalis DSM 1135, complete genomePTS system, mannose/fructose/sorbose family, IID subunit2e-33143
NC_008526:343445:3656743656743672721599Lactobacillus casei ATCC 334, complete genomeMannose-specific PTS system component IICD9e-33141
NC_013198:394000:4184674184674201551689Lactobacillus rhamnosus GG, complete genomePTS system, mannose-specific IICD component4e-32139
NC_010067:1116148:112565511256551126425771Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein1e-31138
NC_013171:228356:228356228356229294939Anaerococcus prevotii DSM 20548, complete genomePTS system mannose/fructose/sorbose family IID component3e-30133
NC_016023:875416:883779883779884585807Bacillus coagulans 36D1 chromosome, complete genomePTS system mannose/fructose/sorbose family transporter subunit IID4e-30133
NC_017047:3212000:321415532141553214997843Rahnella aquatilis HX2 chromosome, complete genomePTS system mannose-specific transporter subunit IID4e-30132
NC_015061:3147691:314955331495533150395843Rahnella sp. Y9602 chromosome, complete genomePTS system, mannose/fructose/sorbose family, IID subunit4e-30132
NC_016818:3148000:315008931500893150931843Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completePTS system mannose/fructose/sorbose family transporter subunit IID4e-30132
NC_012880:2399205:240318524031852404024840Dickeya dadantii Ech703, complete genomePTS system, mannose/fructose/sorbose family, IID subunit2e-28127
NC_013192:2434664:245197524519752452808834Leptotrichia buccalis DSM 1135, complete genomePTS system, mannose/fructose/sorbose family, IID subunit3e-28126
NC_009617:4436837:445046144504614451282822Clostridium beijerinckii NCIMB 8052 chromosome, complete genomePTS system mannose/fructose/sorbose family transporter subunit IID2e-25117
NC_016023:875416:884578884578885378801Bacillus coagulans 36D1 chromosome, complete genomePTS system sorbose-specific transporter subunit IIC1e-23111
NC_016612:2902628:292990929299092930757849Klebsiella oxytoca KCTC 1686 chromosome, complete genomePTS system mannose/fructose/sorbose family transporter subunit IID1e-20101
NC_013199:392450:412726412726413574849Lactobacillus rhamnosus Lc 705, complete genomePTS system, mannose/fructose/sorbose IID component2e-20100
NC_015389:1782825:179819117981911799054864Coriobacterium glomerans PW2 chromosome, complete genomePTS system IID component, Man family2e-1997.8
NC_010380:124655:147184147184147999816Streptococcus pneumoniae Hungary19A-6, complete genomePTS system, IID component3e-1996.7
NC_009442:1158268:116443711644371165252816Streptococcus suis 05ZYH33 chromosome, complete genomephosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID2e-1894.4
NC_015424:2357600:237836123783612379137777Aeromonas veronii B565 chromosome, complete genomePTS system, IID component2e-1894.4
NC_016023:1769925:178811317881131788934822Bacillus coagulans 36D1 chromosome, complete genomePTS system mannose/fructose/sorbose family transporter subunit IID8e-1892
NC_003198:3855157:387828538782853879142858Salmonella enterica subsp. enterica serovar Typhi str. CT18,putative PTS system protein1e-1791.7
NC_004631:3841975:386377538637753864632858Salmonella enterica subsp. enterica serovar Typhi Ty2, completeputative PTS system protein1e-1791.7
NC_015389:1977736:200684920068492007703855Coriobacterium glomerans PW2 chromosome, complete genomePTS system IID component, Man family2e-1790.5
NC_020063:4653422:466878846687884669588801Enterobacteriaceae bacterium strain FGI 57, complete genomephosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC2e-1790.5
NC_009089:581655:583393583393584232840Clostridium difficile 630, complete genomePTS system, IId component4e-1789.7
NC_015425:841754:855681855681856496816Clostridium botulinum BKT015925 chromosome, complete genomePTS system mannose/fructose/sorbose family transporter subunit IIC4e-1789.7
NC_009792:4693152:470986447098644710724861Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein6e-1789
NC_011294:4604283:462807446280744628853780Salmonella enterica subsp. enterica serovar Enteritidis strPTS system transporter subunit C7e-1789
NC_020063:4653422:466958146695814670423843Enterobacteriaceae bacterium strain FGI 57, complete genomephosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID2e-1687.8
NC_011134:1222739:122454512245451225333789Streptococcus equi subsp. zooepidemicus str. MGCS10565, completemannose permease IID component ManZ4e-1686.3
NC_015389:1977736:200605120060512006845795Coriobacterium glomerans PW2 chromosome, complete genomephosphotransferase system PTS sorbose-specific IIC subunit6e-1685.9
NC_015519:270637:287720287720288547828Tepidanaerobacter sp. Re1 chromosome, complete genomePTS system mannose/fructose/sorbose family transporter subunit IID1e-1585.1
NC_011742:3799788:381028038102803811026747Escherichia coli S88 chromosome, complete genomephosphotransferase system enzyme IIC7e-1479
NC_008563:3888232:389553238955323896278747Escherichia coli APEC O1, complete genomehypothetical protein7e-1479
NC_007946:3855445:386274538627453863491747Escherichia coli UTI89, complete genomeputative phosphotransferase system protein7e-1479
NC_014376:4369666:436966643696664370448783Clostridium saccharolyticum WM1 chromosome, complete genomephosphotransferase system PTS sorbose-specific IIC subunit8e-1479
NC_011149:4474012:449142044914204492292873Salmonella enterica subsp. enterica serovar Agona str. SL483,fructose permease iid component1e-1275.1
NC_015424:2357600:237913023791302379915786Aeromonas veronii B565 chromosome, complete genomePTS system, IIC component1e-1274.7
NC_008563:3888232:389622338962233897125903Escherichia coli APEC O1, complete genomehypothetical protein1e-1171.6
NC_011149:4474012:449065744906574491406750Salmonella enterica subsp. enterica serovar Agona str. SL483,1e-1171.6
NC_011742:3799788:381094738109473811873927Escherichia coli S88 chromosome, complete genomephosphotransferase system enzyme IID1e-1171.6
NC_014377:1897857:190925419092541910114861Thermosediminibacter oceani DSM 16646 chromosome, complete genomePTS system IID component, Man family (TC 4.A.6)4e-1170.1
NC_013199:392450:411874411874412707834Lactobacillus rhamnosus Lc 705, complete genomePTS system, mannose-specific IIC component (ManY)5e-1169.7
NC_009442:1158268:116523911652391166015777Streptococcus suis 05ZYH33 chromosome, complete genomephosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC7e-1168.9
NC_015425:841754:854861854861855679819Clostridium botulinum BKT015925 chromosome, complete genomePTS system mannose/fructose/sorbose family transporter subunit IIC4e-1066.6
NC_015389:1782825:179732317973231798201879Coriobacterium glomerans PW2 chromosome, complete genomephosphotransferase system PTS sorbose-specific IIC subunit8e-1065.5
NC_014758:1489761:148976114897611490471711Calditerrivibrio nitroreducens DSM 19672 chromosome, completepts system mannose/fructose/sorbose family iid component1e-0965.1
NC_003198:3855157:387753638775363878285750Salmonella enterica subsp. enterica serovar Typhi str. CT18,putative PTS system protein9e-0962
NC_004631:3841975:386302638630263863775750Salmonella enterica subsp. enterica serovar Typhi Ty2, completeputative PTS system protein9e-0962
NC_009792:4693152:471072147107214711470750Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein2e-0861.2
NC_010380:124655:146292146292147197906Streptococcus pneumoniae Hungary19A-6, complete genomephosphotransferase system sugar-specific eiic component3e-0860.5
NC_011134:1222739:122536912253691226178810Streptococcus equi subsp. zooepidemicus str. MGCS10565, completemannose permease IIC component ManY3e-0860.5
NC_016023:1769925:178731617873161788116801Bacillus coagulans 36D1 chromosome, complete genomePTS system sorbose-specific transporter subunit IIC3e-0757.4
NC_015519:270637:288540288540289301762Tepidanaerobacter sp. Re1 chromosome, complete genomephosphotransferase system PTS sorbose-specific IIC subunit3e-0757
NC_015389:809474:817609817609818496888Coriobacterium glomerans PW2 chromosome, complete genomePTS system IID component, Man family3e-0653.9
NC_011660:2509362:251733925173392518145807Listeria monocytogenes HCC23 chromosome, complete genomePTS system fructose-specific transporter subunit IIC3e-0653.9
NC_007946:3855445:386362838636283864338711Escherichia coli UTI89, complete genomeputative phosphotransferase system protein9e-0652
NC_009617:4436837:445130444513044452095792Clostridium beijerinckii NCIMB 8052 chromosome, complete genomePTS system mannose/fructose/sorbose family transporter subunit IIC9e-0652